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Polymorphism Details
Study:
Deng, 2004
Gene:
SLC1A2
(EAAT2; GLT-1)
View on ALSGene
View on MSGene
Protein:
excitatory amino acid transporter 2
(solute carrier family 1, member 2; glutamate/aspartate transporter II; excitotoxic amino acid transporter 2; glial high affinity glutamate transporter; sodium-dependent glutamate/aspartate transporter 2)
Chromosome:
11
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 30 December 2009
Total number of polymorphisms investigated by this study: 11
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Asian
rs1923295
Japan (I)
SZ
CTR
0.44
0.39
0.57
0.61
20 (0.200)
16 (0.160)
47 (0.470)
46 (0.460)
33 (0.330)
38 (0.380)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Asian
rs4755404
Japan (I)
SZ
CTR
0.39
0.26
0.61
0.74
13 (0.130)
4 (0.040)
52 (0.520)
44 (0.440)
35 (0.350)
52 (0.520)
rs4755404
Japan (II)
SZ
CTR
0.41
0.34
0.60
0.67
13 (0.130)
6 (0.060)
55 (0.550)
55 (0.550)
32 (0.320)
39 (0.390)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Asian
rs4534557
Japan (I)
SZ
CTR
0.45
0.35
0.55
0.65
21 (0.210)
9 (0.090)
48 (0.480)
52 (0.520)
31 (0.310)
39 (0.390)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Asian
rs4756224
Japan (I)
SZ
CTR
0.28
0.27
0.73
0.73
4 (0.040)
6 (0.060)
47 (0.470)
42 (0.420)
49 (0.490)
52 (0.520)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs1923298
Japan (I)
SZ
CTR
0.24
0.26
0.77
0.75
2 (0.020)
4 (0.040)
43 (0.430)
43 (0.430)
55 (0.550)
53 (0.530)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Asian
rs1885343
Japan (I)
SZ
CTR
0.49
0.47
0.52
0.53
24 (0.240)
24 (0.240)
49 (0.490)
46 (0.460)
27 (0.270)
30 (0.300)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
SNP7
Japan (I)
SZ
CTR
0.52
0.46
0.49
0.54
26 (0.260)
18 (0.180)
51 (0.510)
56 (0.560)
23 (0.230)
26 (0.260)
SNP7
Japan (II)
SZ
CTR
0.54
0.45
0.47
0.55
23 (0.230)
15 (0.150)
61 (0.610)
60 (0.600)
16 (0.160)
25 (0.250)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs752949
Japan (I)
SZ
CTR
0.31
0.30
0.70
0.71
10 (0.100)
5 (0.050)
41 (0.410)
49 (0.490)
49 (0.490)
46 (0.460)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs1042113
Japan (I)
SZ
CTR
0.32
0.29
0.68
0.71
11 (0.110)
5 (0.050)
42 (0.420)
48 (0.480)
47 (0.470)
47 (0.470)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
del-Allele
A-Allele
del/del
(frequency)
del/A
(frequency)
A/A
(frequency)
Asian
rs3838796
Japan (I)
SZ
CTR
0.34
0.32
0.66
0.68
12 (0.120)
9 (0.090)
44 (0.440)
46 (0.460)
44 (0.440)
45 (0.450)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Asian
rs1570216
Japan (I)
SZ
CTR
0.23
0.22
0.78
0.78
5 (0.050)
3 (0.030)
35 (0.350)
38 (0.380)
60 (0.600)
59 (0.590)
SZGene Recent Updates
SZGene Stats
Studies: 1727
Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
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