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Printable version
Polymorphism Details
Study:
Mah, 2006
Gene:
PLXNA2
(OCT; PLXN2)
View on PDGene
Protein:
plexin A2
(plexin 2; semaphorin receptor OCT; transmembrane protein OCT)
Chromosome:
1
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 22 October 2010
Total number of polymorphisms investigated by this study: 15
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
African Descent
rs752016
USA (IV)
SZ
CTR
0.07
0.07
0.93
0.93
0 (0.000)
2 (0.011)
21 (0.143)
21 (0.119)
126 (0.857)
154 (0.870)
Asian
rs752016
USA (V)
SZ
CTR
0.39
0.47
0.61
0.53
8 (0.140)
15 (0.211)
29 (0.509)
37 (0.521)
20 (0.351)
19 (0.268)
Caucasian
rs752016
USA (I)
SZ
CTR
0.16
0.22
0.84
0.78
9 (0.030)
16 (0.050)
79 (0.260)
107 (0.331)
216 (0.711)
200 (0.619)
rs752016
USA (II)
SZ
CTR
0.16
0.22
0.84
0.78
5 (0.028)
7 (0.031)
49 (0.272)
86 (0.381)
126 (0.700)
133 (0.588)
Hispanic
rs752016
USA (III)
SZ
CTR
0.18
0.22
0.82
0.78
4 (0.040)
7 (0.063)
28 (0.280)
34 (0.306)
68 (0.680)
70 (0.631)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
African Descent
rs841865
USA (IV)
SZ
CTR
0.05
0.03
0.95
0.97
0 (0.000)
0 (0.000)
16 (0.107)
12 (0.067)
133 (0.893)
166 (0.933)
Asian
rs841865
USA (V)
SZ
CTR
0.30
0.31
0.70
0.69
7 (0.125)
6 (0.085)
20 (0.357)
32 (0.451)
29 (0.518)
33 (0.465)
Caucasian
rs841865
USA (I)
SZ
CTR
0.17
0.23
0.83
0.77
9 (0.029)
13 (0.040)
83 (0.271)
120 (0.372)
214 (0.699)
190 (0.588)
rs841865
USA (II)
SZ
CTR
0.16
0.21
0.84
0.79
4 (0.021)
9 (0.040)
51 (0.271)
77 (0.341)
133 (0.707)
140 (0.619)
Hispanic
rs841865
USA (III)
SZ
CTR
0.12
0.12
0.89
0.88
3 (0.030)
1 (0.009)
17 (0.170)
24 (0.218)
80 (0.800)
85 (0.773)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
African Descent
rs1327175
USA (IV)
SZ
CTR
0.02
0.01
0.98
0.99
0 (0.000)
0 (0.000)
6 (0.041)
4 (0.023)
140 (0.959)
173 (0.977)
Asian
rs1327175
USA (V)
SZ
CTR
0.09
0.10
0.91
0.90
0 (0.000)
0 (0.000)
10 (0.179)
14 (0.206)
46 (0.821)
54 (0.794)
Caucasian
rs1327175
USA (I)
SZ
CTR
0.04
0.08
0.96
0.92
0 (0.000)
3 (0.009)
28 (0.089)
48 (0.149)
288 (0.911)
271 (0.842)
rs1327175
USA (II)
SZ
CTR
0.03
0.06
0.97
0.94
2 (0.011)
0 (0.000)
9 (0.047)
27 (0.122)
179 (0.942)
194 (0.878)
Hispanic
rs1327175
USA (III)
SZ
CTR
0.06
0.11
0.94
0.89
0 (0.000)
2 (0.018)
12 (0.121)
20 (0.182)
87 (0.879)
88 (0.800)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
African Descent
rs2498028
USA (IV)
SZ
CTR
0.04
0.03
0.96
0.97
0 (0.000)
0 (0.000)
12 (0.083)
9 (0.052)
133 (0.917)
165 (0.948)
Asian
rs2498028
USA (V)
SZ
CTR
0.27
0.33
0.73
0.67
6 (0.111)
6 (0.088)
17 (0.315)
33 (0.485)
31 (0.574)
29 (0.426)
Caucasian
rs2498028
USA (I)
SZ
CTR
0.13
0.20
0.87
0.80
0 (0.000)
13 (0.040)
81 (0.260)
103 (0.319)
231 (0.740)
207 (0.641)
rs2498028
USA (II)
SZ
CTR
0.15
0.19
0.85
0.81
4 (0.022)
7 (0.031)
45 (0.249)
73 (0.323)
132 (0.729)
146 (0.646)
Hispanic
rs2498028
USA (III)
SZ
CTR
0.11
0.10
0.89
0.90
3 (0.029)
1 (0.009)
16 (0.157)
20 (0.182)
83 (0.814)
89 (0.809)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
African Descent
rs2478813
USA (IV)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Asian
rs2478813
USA (V)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Caucasian
rs2478813
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs2478813
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Hispanic
rs2478813
USA (III)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
African Descent
rs2498018
USA (IV)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Asian
rs2498018
USA (V)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Caucasian
rs2498018
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs2498018
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Hispanic
rs2498018
USA (III)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
African Descent
rs2498021
USA (IV)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Asian
rs2498021
USA (V)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Caucasian
rs2498021
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs2498021
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Hispanic
rs2498021
USA (III)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
African Descent
rs2498024
USA (IV)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Asian
rs2498024
USA (V)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Caucasian
rs2498024
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs2498024
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Hispanic
rs2498024
USA (III)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
m-Allele
M-Allele
m/m
(frequency)
m/M
(frequency)
M/M
(frequency)
African Descent
rs2785624
USA (IV)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Asian
rs2785624
USA (V)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Caucasian
rs2785624
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs2785624
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Hispanic
rs2785624
USA (III)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
m-Allele
M-Allele
m/m
(frequency)
m/M
(frequency)
M/M
(frequency)
African Descent
rs3736963
USA (IV)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Asian
rs3736963
USA (V)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Caucasian
rs3736963
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs3736963
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Hispanic
rs3736963
USA (III)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
African Descent
rs4844408
USA (IV)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Asian
rs4844408
USA (V)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Caucasian
rs4844408
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs4844408
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Hispanic
rs4844408
USA (III)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
African Descent
rs4844639
USA (IV)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Asian
rs4844639
USA (V)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Caucasian
rs4844639
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs4844639
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Hispanic
rs4844639
USA (III)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
African Descent
rs591752
USA (IV)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Asian
rs591752
USA (V)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Caucasian
rs591752
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs591752
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Hispanic
rs591752
USA (III)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
African Descent
rs716461
USA (IV)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Asian
rs716461
USA (V)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Caucasian
rs716461
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs716461
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Hispanic
rs716461
USA (III)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs752016
Australia
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Other/Mixed
rs752016
Mixed
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Other/Mixed
rs841865
Mixed
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Caucasian
rs1327175
Australia
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
Other/Mixed
rs1327175
Mixed
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Other/Mixed
rs2498028
Mixed
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
m-Allele
M-Allele
m/m
(frequency)
m/M
(frequency)
M/M
(frequency)
Caucasian
PLXNA2_4unknown-SNPs
Australia
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
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