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Polymorphism Details     
Back Search Methods Disclaimer Credits
 Study: Deng, 2007
 Gene: SLC1A3  (EA6; EAAT1; GLAST; GLAST1)  Entrez Gene    View on MSGene
 Protein: solute carrier family 1 (glial high affinity glutamate transporter), member 3  (glutamate transporter variant EAAT1ex9skip)  ProteinLink
 Chromosome: 5   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 14 March 2007
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 11

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele A-Allele C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
 Asian
rs1428973 Japan SZ
CTR
0.11
0.16
0.90
0.85
3 (0.030)
3 (0.030)
15 (0.150)
25 (0.250)
82 (0.820)
72 (0.720)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs2033267 Japan SZ
CTR
0.33
0.39
0.68
0.62
9 (0.090)
16 (0.160)
47 (0.470)
45 (0.450)
44 (0.440)
39 (0.390)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs426040 Japan SZ
CTR
0.29
0.26
0.72
0.75
6 (0.060)
4 (0.040)
45 (0.450)
43 (0.430)
49 (0.490)
53 (0.530)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs4869684 Japan SZ
CTR
0.32
0.34
0.69
0.66
11 (0.110)
11 (0.110)
41 (0.410)
46 (0.460)
48 (0.480)
43 (0.430)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele C-Allele G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
 Asian
rs1544795 Japan SZ
CTR
0.30
0.35
0.70
0.65
9 (0.090)
9 (0.090)
42 (0.420)
52 (0.520)
49 (0.490)
39 (0.390)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs3776585 Japan SZ
CTR
0.33
0.41
0.67
0.59
13 (0.130)
18 (0.180)
40 (0.400)
46 (0.460)
47 (0.470)
36 (0.360)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs962686 Japan SZ
CTR
0.45
0.38
0.55
0.63
23 (0.230)
13 (0.130)
44 (0.440)
49 (0.490)
33 (0.330)
38 (0.380)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs2303716 Japan SZ
CTR
0.24
0.30
0.77
0.70
5 (0.050)
11 (0.110)
37 (0.370)
38 (0.380)
58 (0.580)
51 (0.510)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs3776586 Japan SZ
CTR
0.25
0.28
0.75
0.72
6 (0.060)
7 (0.070)
38 (0.380)
42 (0.420)
56 (0.560)
51 (0.510)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs1049524 Japan SZ
CTR
0.42
0.39
0.59
0.62
15 (0.150)
16 (0.160)
53 (0.530)
45 (0.450)
32 (0.320)
39 (0.390)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs1529461 Japan SZ
CTR
0.25
0.25
0.76
0.76
4 (0.040)
6 (0.060)
41 (0.410)
37 (0.370)
55 (0.550)
57 (0.570)
SZGene Recent Updates
SZGene Stats
Studies: 1727
Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
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An up-to-date collection of all published genetic association studies.
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