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Printable version
Polymorphism Details
Study:
Kawashima, 2008
Gene:
SNAP25
(RIC4; SEC9; SNAP; RIC-4; SNAP-25; bA416N4.2)
Protein:
synaptosomal-associated protein 25
(resistance to inhibitors of cholinesterase 4 homolog (C. elegans))
Chromosome:
20
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 3 October 2010
Total number of polymorphisms investigated by this study: 34
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
G-Allele
T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
Asian
rs6104567
Japan (I)
SZ
CTR
0.26
0.24
0.74
0.76
26 (0.069)
22 (0.059)
146 (0.387)
136 (0.367)
205 (0.544)
213 (0.574)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Asian
rs1889189
Japan (I)
SZ
CTR
0.24
0.22
0.76
0.78
21 (0.056)
18 (0.049)
136 (0.361)
128 (0.347)
220 (0.584)
223 (0.604)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs3787303
Japan (I)
SZ
CTR
0.31
0.30
0.69
0.70
37 (0.098)
34 (0.090)
162 (0.430)
158 (0.420)
178 (0.472)
184 (0.489)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs2423487
Japan (I)
SZ
CTR
0.17
0.17
0.83
0.83
11 (0.029)
11 (0.030)
106 (0.283)
104 (0.283)
257 (0.687)
253 (0.688)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Asian
rs363012
Japan (I)
SZ
CTR
0.31
0.30
0.69
0.70
36 (0.095)
33 (0.088)
161 (0.426)
157 (0.416)
181 (0.479)
187 (0.496)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs363039
Japan (I)
SZ
CTR
0.43
0.40
0.57
0.60
70 (0.187)
58 (0.158)
184 (0.491)
176 (0.478)
121 (0.323)
134 (0.364)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs363014
Japan (I)
SZ
CTR
0.46
0.45
0.54
0.55
80 (0.212)
77 (0.204)
187 (0.496)
187 (0.496)
110 (0.292)
113 (0.300)
rs363014
Japan (II)
SZ
CTR
0.44
0.42
0.56
0.58
129 (0.197)
94 (0.178)
324 (0.494)
257 (0.488)
203 (0.309)
176 (0.334)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Asian
rs12626080
Japan (II)
SZ
CTR
0.16
0.17
0.84
0.83
17 (0.026)
15 (0.029)
177 (0.269)
146 (0.279)
464 (0.705)
362 (0.692)
rs12626080
Japan (I)
SZ
CTR
0.21
0.16
0.79
0.84
16 (0.043)
10 (0.027)
124 (0.331)
100 (0.272)
235 (0.627)
258 (0.701)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs363052
Japan (I)
SZ
CTR
0.16
0.16
0.84
0.84
10 (0.027)
9 (0.024)
102 (0.272)
99 (0.268)
263 (0.701)
261 (0.707)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs363053
Japan (I)
SZ
CTR
0.30
0.29
0.70
0.71
33 (0.088)
31 (0.084)
156 (0.418)
153 (0.414)
184 (0.493)
186 (0.503)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs4813024
Japan (I)
SZ
CTR
0.22
0.24
0.78
0.76
19 (0.050)
21 (0.056)
130 (0.345)
136 (0.360)
228 (0.605)
221 (0.585)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
C-Allele
A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
Asian
rs6074113
Japan (I)
SZ
CTR
0.34
0.34
0.66
0.66
42 (0.113)
43 (0.117)
166 (0.446)
166 (0.450)
164 (0.441)
160 (0.434)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Asian
rs363022
Japan (I)
SZ
CTR
0.39
0.41
0.61
0.59
58 (0.155)
63 (0.171)
179 (0.479)
179 (0.485)
137 (0.366)
127 (0.344)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Asian
rs362564
Japan (I)
SZ
CTR
0.45
0.42
0.55
0.58
78 (0.207)
67 (0.180)
186 (0.495)
182 (0.489)
112 (0.298)
123 (0.331)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Asian
rs362547
Japan (I)
SZ
CTR
0.22
0.18
0.78
0.82
18 (0.048)
13 (0.035)
129 (0.347)
113 (0.301)
225 (0.605)
250 (0.665)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs362567
Japan (I)
SZ
CTR
0.14
0.13
0.86
0.87
8 (0.021)
6 (0.016)
93 (0.247)
84 (0.224)
276 (0.732)
285 (0.760)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Asian
rs362570
Japan (I)
SZ
CTR
0.35
0.33
0.65
0.67
46 (0.123)
40 (0.109)
171 (0.456)
163 (0.443)
158 (0.421)
165 (0.448)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs362584
Japan (I)
SZ
CTR
0.21
0.21
0.79
0.79
16 (0.043)
17 (0.046)
123 (0.331)
124 (0.334)
233 (0.626)
230 (0.620)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Asian
rs16991334
Japan (I)
SZ
CTR
0.10
0.10
0.90
0.90
4 (0.011)
4 (0.011)
65 (0.175)
65 (0.177)
303 (0.815)
298 (0.812)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Asian
rs6039807
Japan (I)
SZ
CTR
0.45
0.43
0.55
0.57
76 (0.204)
69 (0.188)
184 (0.495)
180 (0.490)
112 (0.301)
118 (0.322)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
C-Allele
A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
Asian
rs362995
Japan (I)
SZ
CTR
0.27
0.25
0.73
0.75
27 (0.072)
23 (0.061)
148 (0.394)
141 (0.374)
201 (0.535)
213 (0.565)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs363006
Japan (I)
SZ
CTR
0.01
0.01
0.99
0.99
0 (0.000)
0 (0.000)
10 (0.027)
6 (0.016)
363 (0.973)
364 (0.984)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs6108463
Japan (I)
SZ
CTR
0.18
0.19
0.82
0.81
12 (0.032)
14 (0.038)
111 (0.298)
114 (0.310)
250 (0.670)
240 (0.652)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs362988
Japan (I)
SZ
CTR
0.38
0.40
0.62
0.60
54 (0.144)
59 (0.159)
176 (0.471)
178 (0.481)
144 (0.385)
133 (0.359)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Asian
rs6039820
Japan (I)
SZ
CTR
0.40
0.37
0.60
0.63
60 (0.159)
52 (0.138)
181 (0.480)
176 (0.468)
136 (0.361)
148 (0.394)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs6108464
Japan (I)
SZ
CTR
0.40
0.41
0.60
0.59
61 (0.162)
62 (0.165)
181 (0.480)
181 (0.481)
135 (0.358)
133 (0.354)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs3787283
Japan (I)
SZ
CTR
0.46
0.47
0.54
0.53
80 (0.212)
81 (0.216)
187 (0.496)
187 (0.499)
110 (0.292)
107 (0.285)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
A-Allele
C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
Asian
rs3746544 (MnlI)
Japan (I)
SZ
CTR
0.26
0.25
0.74
0.75
25 (0.067)
23 (0.063)
143 (0.384)
137 (0.373)
204 (0.548)
207 (0.564)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs6133852
Japan (I)
SZ
CTR
0.24
0.21
0.76
0.79
21 (0.056)
16 (0.042)
136 (0.362)
123 (0.326)
219 (0.582)
238 (0.631)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs6104571
Japan (II)
SZ
CTR
0.20
0.22
0.80
0.78
25 (0.038)
25 (0.047)
207 (0.316)
179 (0.340)
424 (0.646)
323 (0.613)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Asian
rs363013
Japan (II)
SZ
CTR
0.01
0.01
0.99
0.99
0 (0.000)
0 (0.000)
13 (0.020)
11 (0.021)
643 (0.980)
515 (0.979)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Asian
rs363015
Japan (II)
SZ
CTR
0.06
0.06
0.94
0.94
2 (0.003)
2 (0.004)
74 (0.113)
62 (0.118)
580 (0.884)
463 (0.879)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
T-Allele
A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
Asian
rs6039792
Japan (II)
SZ
CTR
0.19
0.21
0.81
0.79
24 (0.037)
24 (0.046)
203 (0.309)
176 (0.334)
429 (0.654)
327 (0.620)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs363050
Japan (II)
SZ
CTR
0.21
0.20
0.79
0.80
28 (0.043)
22 (0.042)
215 (0.328)
172 (0.326)
413 (0.630)
333 (0.632)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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