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Printable version  
Polymorphism Details     
Back Search Methods Disclaimer Credits
 Study: Kawashima, 2008
 Gene: SNAP25  (RIC4; SEC9; SNAP; RIC-4; SNAP-25; bA416N4.2)  Entrez Gene
 Protein: synaptosomal-associated protein 25  (resistance to inhibitors of cholinesterase 4 homolog (C. elegans))  ProteinLink
 Chromosome: 20   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 3 October 2010
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 34

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Asian
rs6104567 Japan (I) SZ
CTR
0.26
0.24
0.74
0.76
26 (0.069)
22 (0.059)
146 (0.387)
136 (0.367)
205 (0.544)
213 (0.574)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs1889189 Japan (I) SZ
CTR
0.24
0.22
0.76
0.78
21 (0.056)
18 (0.049)
136 (0.361)
128 (0.347)
220 (0.584)
223 (0.604)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs3787303 Japan (I) SZ
CTR
0.31
0.30
0.69
0.70
37 (0.098)
34 (0.090)
162 (0.430)
158 (0.420)
178 (0.472)
184 (0.489)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs2423487 Japan (I) SZ
CTR
0.17
0.17
0.83
0.83
11 (0.029)
11 (0.030)
106 (0.283)
104 (0.283)
257 (0.687)
253 (0.688)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs363012 Japan (I) SZ
CTR
0.31
0.30
0.69
0.70
36 (0.095)
33 (0.088)
161 (0.426)
157 (0.416)
181 (0.479)
187 (0.496)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs363039 Japan (I) SZ
CTR
0.43
0.40
0.57
0.60
70 (0.187)
58 (0.158)
184 (0.491)
176 (0.478)
121 (0.323)
134 (0.364)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs363014 Japan (I) SZ
CTR
0.46
0.45
0.54
0.55
80 (0.212)
77 (0.204)
187 (0.496)
187 (0.496)
110 (0.292)
113 (0.300)
rs363014 Japan (II) SZ
CTR
0.44
0.42
0.56
0.58
129 (0.197)
94 (0.178)
324 (0.494)
257 (0.488)
203 (0.309)
176 (0.334)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele C-Allele G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
 Asian
rs12626080 Japan (II) SZ
CTR
0.16
0.17
0.84
0.83
17 (0.026)
15 (0.029)
177 (0.269)
146 (0.279)
464 (0.705)
362 (0.692)
rs12626080 Japan (I) SZ
CTR
0.21
0.16
0.79
0.84
16 (0.043)
10 (0.027)
124 (0.331)
100 (0.272)
235 (0.627)
258 (0.701)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs363052 Japan (I) SZ
CTR
0.16
0.16
0.84
0.84
10 (0.027)
9 (0.024)
102 (0.272)
99 (0.268)
263 (0.701)
261 (0.707)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs363053 Japan (I) SZ
CTR
0.30
0.29
0.70
0.71
33 (0.088)
31 (0.084)
156 (0.418)
153 (0.414)
184 (0.493)
186 (0.503)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs4813024 Japan (I) SZ
CTR
0.22
0.24
0.78
0.76
19 (0.050)
21 (0.056)
130 (0.345)
136 (0.360)
228 (0.605)
221 (0.585)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele C-Allele A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
 Asian
rs6074113 Japan (I) SZ
CTR
0.34
0.34
0.66
0.66
42 (0.113)
43 (0.117)
166 (0.446)
166 (0.450)
164 (0.441)
160 (0.434)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele C-Allele G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
 Asian
rs363022 Japan (I) SZ
CTR
0.39
0.41
0.61
0.59
58 (0.155)
63 (0.171)
179 (0.479)
179 (0.485)
137 (0.366)
127 (0.344)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs362564 Japan (I) SZ
CTR
0.45
0.42
0.55
0.58
78 (0.207)
67 (0.180)
186 (0.495)
182 (0.489)
112 (0.298)
123 (0.331)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs362547 Japan (I) SZ
CTR
0.22
0.18
0.78
0.82
18 (0.048)
13 (0.035)
129 (0.347)
113 (0.301)
225 (0.605)
250 (0.665)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs362567 Japan (I) SZ
CTR
0.14
0.13
0.86
0.87
8 (0.021)
6 (0.016)
93 (0.247)
84 (0.224)
276 (0.732)
285 (0.760)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs362570 Japan (I) SZ
CTR
0.35
0.33
0.65
0.67
46 (0.123)
40 (0.109)
171 (0.456)
163 (0.443)
158 (0.421)
165 (0.448)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs362584 Japan (I) SZ
CTR
0.21
0.21
0.79
0.79
16 (0.043)
17 (0.046)
123 (0.331)
124 (0.334)
233 (0.626)
230 (0.620)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs16991334 Japan (I) SZ
CTR
0.10
0.10
0.90
0.90
4 (0.011)
4 (0.011)
65 (0.175)
65 (0.177)
303 (0.815)
298 (0.812)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs6039807 Japan (I) SZ
CTR
0.45
0.43
0.55
0.57
76 (0.204)
69 (0.188)
184 (0.495)
180 (0.490)
112 (0.301)
118 (0.322)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele C-Allele A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
 Asian
rs362995 Japan (I) SZ
CTR
0.27
0.25
0.73
0.75
27 (0.072)
23 (0.061)
148 (0.394)
141 (0.374)
201 (0.535)
213 (0.565)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs363006 Japan (I) SZ
CTR
0.01
0.01
0.99
0.99
0 (0.000)
0 (0.000)
10 (0.027)
6 (0.016)
363 (0.973)
364 (0.984)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs6108463 Japan (I) SZ
CTR
0.18
0.19
0.82
0.81
12 (0.032)
14 (0.038)
111 (0.298)
114 (0.310)
250 (0.670)
240 (0.652)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs362988 Japan (I) SZ
CTR
0.38
0.40
0.62
0.60
54 (0.144)
59 (0.159)
176 (0.471)
178 (0.481)
144 (0.385)
133 (0.359)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs6039820 Japan (I) SZ
CTR
0.40
0.37
0.60
0.63
60 (0.159)
52 (0.138)
181 (0.480)
176 (0.468)
136 (0.361)
148 (0.394)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs6108464 Japan (I) SZ
CTR
0.40
0.41
0.60
0.59
61 (0.162)
62 (0.165)
181 (0.480)
181 (0.481)
135 (0.358)
133 (0.354)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs3787283 Japan (I) SZ
CTR
0.46
0.47
0.54
0.53
80 (0.212)
81 (0.216)
187 (0.496)
187 (0.499)
110 (0.292)
107 (0.285)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele A-Allele C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
 Asian
rs3746544 (MnlI) Japan (I) SZ
CTR
0.26
0.25
0.74
0.75
25 (0.067)
23 (0.063)
143 (0.384)
137 (0.373)
204 (0.548)
207 (0.564)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs6133852 Japan (I) SZ
CTR
0.24
0.21
0.76
0.79
21 (0.056)
16 (0.042)
136 (0.362)
123 (0.326)
219 (0.582)
238 (0.631)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs6104571 Japan (II) SZ
CTR
0.20
0.22
0.80
0.78
25 (0.038)
25 (0.047)
207 (0.316)
179 (0.340)
424 (0.646)
323 (0.613)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs363013 Japan (II) SZ
CTR
0.01
0.01
0.99
0.99
0 (0.000)
0 (0.000)
13 (0.020)
11 (0.021)
643 (0.980)
515 (0.979)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs363015 Japan (II) SZ
CTR
0.06
0.06
0.94
0.94
2 (0.003)
2 (0.004)
74 (0.113)
62 (0.118)
580 (0.884)
463 (0.879)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele T-Allele A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
 Asian
rs6039792 Japan (II) SZ
CTR
0.19
0.21
0.81
0.79
24 (0.037)
24 (0.046)
203 (0.309)
176 (0.334)
429 (0.654)
327 (0.620)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs363050 Japan (II) SZ
CTR
0.21
0.20
0.79
0.80
28 (0.043)
22 (0.042)
215 (0.328)
172 (0.326)
413 (0.630)
333 (0.632)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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