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Polymorphism Details     
Back Search Methods Disclaimer Credits
 Study: Ingason, 2010
 Gene: C6orf217   Entrez Gene
 Protein: chromosome 6 open reading frame 217   ProteinLink
 Chromosome: 6   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 21 October 2010
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 11

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs7750586 Germany (Munich) SZ
CTR		 0.35
0.36		 0.65
0.64		 56 (0.113)
163 (0.128)		 237 (0.478)
578 (0.455)		 203 (0.409)
529 (0.417)
rs7750586 Denmark (SCOPE) SZ
CTR		 0.35
0.37		 0.65
0.63		 57 (0.126)
126 (0.128)		 200 (0.442)
474 (0.482)		 195 (0.431)
384 (0.390)
rs7750586 Norway (SCOPE) SZ
CTR		 0.37
0.36		 0.63
0.64		 34 (0.147)
25 (0.168)		 104 (0.450)
57 (0.383)		 93 (0.403)
67 (0.450)
rs7750586 UK (Cardiff) SZ
CTR		 0.34
0.37		 0.66
0.63		 62 (0.130)
397 (0.135)		 205 (0.429)
1349 (0.460)		 211 (0.441)
1189 (0.405)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele A-Allele C/C
(frequency)		 C/A
(frequency)		 A/A
(frequency)
 Caucasian
rs9647635 Germany (Munich) SZ
CTR		 0.35
0.36		 0.65
0.64		 56 (0.113)
164 (0.129)		 237 (0.478)
577 (0.454)		 203 (0.409)
531 (0.417)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs9494332 Germany (Munich) SZ
CTR		 0.32
0.35		 0.68
0.65		 50 (0.101)
156 (0.123)		 220 (0.444)
585 (0.460)		 226 (0.456)
530 (0.417)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs9494335 Norway (SCOPE) SZ
CTR		 0.36
0.32		 0.64
0.68		 38 (0.148)
20 (0.120)		 111 (0.432)
66 (0.395)		 108 (0.420)
81 (0.485)
rs9494335 Denmark (SCOPE) SZ
CTR		 0.33
0.33		 0.67
0.67		 59 (0.135)
119 (0.125)		 172 (0.394)
395 (0.416)		 205 (0.470)
436 (0.459)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs9399158 Norway (SCOPE) SZ
CTR		 0.67
0.70		 0.33
0.30		 119 (0.470)
88 (0.518)		 100 (0.395)
62 (0.365)		 34 (0.134)
20 (0.118)
rs9399158 Denmark (SCOPE) SZ
CTR		 0.68
0.69		 0.32
0.31		 213 (0.480)
477 (0.484)		 178 (0.401)
405 (0.411)		 53 (0.119)
103 (0.105)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs10223338 UK-Scotland (SGENE+) SZ
CTR		 0.29
0.30		 0.71
0.70		 51 (0.078)
67 (0.101)		 283 (0.431)
257 (0.389)		 322 (0.491)
337 (0.510)
rs10223338 Germany-Bonn (SGENE+) SZ
CTR		 0.32
0.33		 0.68
0.67		 47 (0.098)
44 (0.120)		 215 (0.447)
154 (0.420)		 219 (0.455)
169 (0.460)
rs10223338 UK-England (SGENE+) SZ
CTR		 0.30
0.30		 0.70
0.70		 11 (0.118)
10 (0.114)		 33 (0.355)
32 (0.364)		 49 (0.527)
46 (0.523)
rs10223338 Finland-general (SGENE+) SZ
CTR		 0.17
0.21		 0.83
0.79		 1 (0.017)
6 (0.041)		 18 (0.305)
50 (0.340)		 40 (0.678)
91 (0.619)
rs10223338 Finland-isolate (SGENE+) SZ
CTR		 0.19
0.19		 0.81
0.81		 5 (0.041)
0 (0.000)		 36 (0.295)
19 (0.380)		 81 (0.664)
31 (0.620)
rs10223338 Iceland (SGENE+) SZ
CTR		 0.27
0.30		 0.73
0.70		 38 (0.065)
1117 (0.097)		 243 (0.413)
4706 (0.410)		 308 (0.523)
5655 (0.493)
rs10223338 Italy (SGENE+) SZ
CTR		 0.29
0.26		 0.71
0.74		 8 (0.095)
8 (0.090)		 33 (0.393)
30 (0.337)		 43 (0.512)
51 (0.573)
rs10223338 Netherlands (SGENE+) SZ
CTR		 0.29
0.33		 0.71
0.67		 53 (0.074)
62 (0.097)		 301 (0.422)
305 (0.475)		 359 (0.504)
275 (0.428)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele A-Allele T/T
(frequency)		 T/A
(frequency)		 A/A
(frequency)
 Caucasian
rs12196952 Germany (Munich) SZ
CTR		 0.32
0.34		 0.68
0.66		 49 (0.099)
144 (0.113)		 218 (0.440)
580 (0.456)		 229 (0.462)
548 (0.431)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs9321521 UK-Scotland (SGENE+) SZ
CTR		 0.34
0.34		 0.66
0.66		 72 (0.111)
85 (0.129)		 300 (0.462)
271 (0.412)		 278 (0.428)
301 (0.458)
rs9321521 Germany-Bonn (SGENE+) SZ
CTR		 0.37
0.39		 0.63
0.61		 64 (0.133)
60 (0.164)		 234 (0.484)
165 (0.451)		 185 (0.383)
141 (0.385)
rs9321521 UK-England (SGENE+) SZ
CTR		 0.32
0.37		 0.68
0.63		 14 (0.154)
12 (0.136)		 30 (0.330)
41 (0.466)		 47 (0.516)
35 (0.398)
rs9321521 Finland-general (SGENE+) SZ
CTR		 0.18
0.22		 0.82
0.78		 1 (0.017)
7 (0.048)		 19 (0.322)
49 (0.338)		 39 (0.661)
89 (0.614)
rs9321521 Finland-isolate (SGENE+) SZ
CTR		 0.19
0.19		 0.81
0.81		 5 (0.041)
0 (0.000)		 37 (0.306)
19 (0.388)		 79 (0.653)
30 (0.612)
rs9321521 Iceland (SGENE+) SZ
CTR		 0.29
0.33		 0.71
0.67		 46 (0.079)
1294 (0.115)		 250 (0.427)
4921 (0.436)		 289 (0.494)
5062 (0.449)
rs9321521 Italy (SGENE+) SZ
CTR		 0.36
0.33		 0.64
0.67		 12 (0.143)
11 (0.124)		 37 (0.440)
36 (0.404)		 35 (0.417)
42 (0.472)
rs9321521 Netherlands (SGENE+) SZ
CTR		 0.33
0.39		 0.67
0.61		 74 (0.104)
94 (0.147)		 324 (0.456)
311 (0.486)		 313 (0.440)
235 (0.367)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele C-Allele G/G
(frequency)		 G/C
(frequency)		 C/C
(frequency)
 Caucasian
rs9494322 UK (Cardiff) SZ
CTR		 0.29
0.32		 0.71
0.68		 46 (0.096)
296 (0.101)		 183 (0.382)
1310 (0.446)		 250 (0.522)
1329 (0.453)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele A-Allele C/C
(frequency)		 C/A
(frequency)		 A/A
(frequency)
 Caucasian
rs1475069 Germany (Munich) SZ
CTR		 0.72
0.68		 0.28
0.32		 251 (0.522)
549 (0.464)		 188 (0.391)
519 (0.439)		 42 (0.087)
115 (0.097)
rs1475069 Germany-Bonn (SGENE+) SZ
CTR		 0.68
0.69		 0.32
0.31		 225 (0.466)
175 (0.481)		 208 (0.431)
151 (0.415)		 50 (0.104)
38 (0.104)
rs1475069 UK-England (SGENE+) SZ
CTR		 0.73
0.72		 0.27
0.28		 52 (0.559)
46 (0.523)		 32 (0.344)
34 (0.386)		 9 (0.097)
8 (0.091)
rs1475069 Finland-general (SGENE+) SZ
CTR		 0.84
0.79		 0.16
0.21		 40 (0.690)
94 (0.644)		 17 (0.293)
42 (0.288)		 1 (0.017)
10 (0.068)
rs1475069 Finland-isolate (SGENE+) SZ
CTR		 0.81
0.81		 0.19
0.19		 83 (0.675)
31 (0.620)		 34 (0.276)
19 (0.380)		 6 (0.049)
0 (0.000)
rs1475069 Iceland (SGENE+) SZ
CTR		 0.74
0.70		 0.26
0.30		 318 (0.542)
5612 (0.491)		 235 (0.400)
4731 (0.414)		 34 (0.058)
1076 (0.094)
rs1475069 Italy (SGENE+) SZ
CTR		 0.73
0.69		 0.27
0.31		 46 (0.548)
43 (0.500)		 30 (0.357)
33 (0.384)		 8 (0.095)
10 (0.116)
rs1475069 Netherlands (SGENE+) SZ
CTR		 0.72
0.67		 0.28
0.33		 368 (0.517)
286 (0.445)		 293 (0.412)
289 (0.450)		 51 (0.072)
67 (0.104)
rs1475069 UK-Scotland (SGENE+) SZ
CTR		 0.70
0.71		 0.30
0.29		 319 (0.487)
345 (0.522)		 280 (0.427)
243 (0.368)		 56 (0.085)
73 (0.110)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs9389329 UK (Cardiff) SZ
CTR		 0.69
0.67		 0.31
0.33		 225 (0.473)
1297 (0.442)		 204 (0.429)
1332 (0.454)		 47 (0.099)
305 (0.104)
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Polymorphisms: 8788
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