Schizophrenia Research Forum - A Catalyst for Creative Thinking
Home Your Profile Become a Member/Get Newsletter Contact Us
What's New
Recent Updates
SRF Papers
Current Papers
Search All Papers
Search Comments
News
Research News
Forums
Current Hypotheses
Idea Lab
Online Discussions
Virtual Conferences
Interviews
Tech Corner
Resources
What We Know
SchizophreniaGene
Animal Models
Drugs in Trials
Research Tools
Grants
Jobs
Conferences
Journals
Community Calendar
General Information
Community
Member Directory
Researcher Profiles
Institutes and Labs
About the Site
Mission
History
SRF Team
Advisory Board
Support Us
How to Cite
Fan (E)Mail
The Schizophrenia Research Forum web site is sponsored by NARSAD, the Brain and Behavior Research Fund, and was created with funding from the U.S. National Institute of Mental Health.
Printable version  
Polymorphism Details     
Back Search Methods Disclaimer Credits
 Study: Sanders, 2008
 Gene: ARVCF   Entrez Gene
 Protein: armadillo repeat protein   ProteinLink
 Chromosome: 22   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 22 October 2010
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 39

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs165849 USA, Australia SZ
CTR		 0.30
0.31		 0.70
0.69		 173 (0.093)
197 (0.098)		 791 (0.423)
862 (0.431)		 906 (0.484)
942 (0.471)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs165815 USA, Australia SZ
CTR		 0.20
0.20		 0.80
0.80		 74 (0.040)
83 (0.041)		 596 (0.319)
648 (0.324)		 1200 (0.642)
1272 (0.635)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs2240717 (795T/C) USA, Australia SZ
CTR		 0.35
0.36		 0.65
0.64		 233 (0.125)
259 (0.129)		 854 (0.457)
923 (0.461)		 783 (0.419)
820 (0.410)


Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs1110478 USA, Australia SZ
CTR		 0.12
0.12		 0.88
0.88		 28 (0.015)
31 (0.015)		 401 (0.214)
435 (0.217)		 1442 (0.771)
1536 (0.767)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs12158201 USA, Australia SZ
CTR		 0.06
0.07		 0.94
0.93		 7 (0.004)
10 (0.005)		 218 (0.117)
257 (0.128)		 1645 (0.880)
1735 (0.867)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele G-Allele T/T
(frequency)		 T/G
(frequency)		 G/G
(frequency)
 Caucasian
rs12168204 USA, Australia SZ
CTR		 0.17
0.17		 0.83
0.83		 52 (0.028)
61 (0.030)		 520 (0.278)
578 (0.289)		 1298 (0.694)
1363 (0.681)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs165840 USA, Australia SZ
CTR		 0.10
0.09		 0.90
0.91		 17 (0.009)
17 (0.008)		 325 (0.174)
338 (0.169)		 1528 (0.817)
1647 (0.823)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs16982871 USA, Australia SZ
CTR		 0.01
0.01		 0.99
0.99		 0 (0.000)
0 (0.000)		 30 (0.016)
44 (0.022)		 1840 (0.984)
1958 (0.978)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele T-Allele A/A
(frequency)		 A/T
(frequency)		 T/T
(frequency)
 Caucasian
rs16982894 USA, Australia SZ
CTR		 0.04
0.05		 0.96
0.95		 4 (0.002)
5 (0.002)		 157 (0.084)
190 (0.095)		 1709 (0.914)
1807 (0.903)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele G-Allele C/C
(frequency)		 C/G
(frequency)		 G/G
(frequency)
 Caucasian
rs1990276 USA, Australia SZ
CTR		 0.32
0.33		 0.68
0.67		 189 (0.101)
214 (0.107)		 811 (0.434)
881 (0.440)		 870 (0.465)
907 (0.453)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs2012714 USA, Australia SZ
CTR		 0.32
0.34		 0.68
0.66		 189 (0.101)
237 (0.118)		 811 (0.434)
904 (0.451)		 870 (0.465)
862 (0.430)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs2073741 USA, Australia SZ
CTR		 0.21
0.22		 0.79
0.78		 82 (0.044)
100 (0.050)		 620 (0.332)
696 (0.348)		 1167 (0.624)
1206 (0.602)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2073744 USA, Australia SZ
CTR		 0.10
0.09		 0.90
0.91		 17 (0.009)
17 (0.008)		 322 (0.172)
334 (0.167)		 1532 (0.819)
1651 (0.825)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs2073746 USA, Australia SZ
CTR		 0.22
0.22		 0.78
0.78		 92 (0.049)
100 (0.050)		 646 (0.345)
694 (0.346)		 1132 (0.605)
1209 (0.604)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2073747 USA, Australia SZ
CTR		 0.22
0.22		 0.78
0.78		 91 (0.049)
100 (0.050)		 644 (0.344)
694 (0.346)		 1135 (0.607)
1209 (0.604)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs2238782 USA, Australia SZ
CTR		 0.34
0.36		 0.66
0.64		 221 (0.118)
255 (0.127)		 844 (0.451)
919 (0.459)		 805 (0.430)
828 (0.414)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele C-Allele G/G
(frequency)		 G/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2238783 USA, Australia SZ
CTR		 0.34
0.36		 0.66
0.64		 221 (0.118)
255 (0.127)		 844 (0.451)
919 (0.459)		 805 (0.430)
828 (0.414)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs2238786 USA, Australia SZ
CTR		 0.28
0.29		 0.72
0.71		 150 (0.080)
165 (0.082)		 759 (0.406)
819 (0.409)		 961 (0.514)
1018 (0.508)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2238788 USA, Australia SZ
CTR		 0.43
0.42		 0.57
0.58		 349 (0.187)
351 (0.175)		 918 (0.491)
975 (0.487)		 603 (0.322)
676 (0.338)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2238792 USA, Australia SZ
CTR		 0.28
0.29		 0.72
0.71		 150 (0.080)
166 (0.083)		 759 (0.406)
821 (0.410)		 961 (0.514)
1015 (0.507)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele C-Allele G/G
(frequency)		 G/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2238795 USA, Australia SZ
CTR		 0.22
0.22		 0.78
0.78		 91 (0.049)
98 (0.049)		 642 (0.343)
689 (0.344)		 1138 (0.608)
1215 (0.607)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs2239395 USA, Australia SZ
CTR		 0.04
0.05		 0.96
0.95		 4 (0.002)
5 (0.002)		 157 (0.084)
197 (0.098)		 1709 (0.914)
1799 (0.899)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele C-Allele A/A
(frequency)		 A/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2240718 USA, Australia SZ
CTR		 0.06
0.05		 0.94
0.95		 6 (0.003)
6 (0.003)		 204 (0.109)
208 (0.104)		 1659 (0.888)
1788 (0.893)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2286480 USA, Australia SZ
CTR		 0.32
0.33		 0.68
0.67		 189 (0.101)
214 (0.107)		 811 (0.434)
881 (0.440)		 870 (0.465)
907 (0.453)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs2531699 USA, Australia SZ
CTR		 0.39
0.38		 0.61
0.62		 282 (0.151)
289 (0.144)		 888 (0.475)
943 (0.471)		 700 (0.374)
770 (0.385)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2531700 USA, Australia SZ
CTR		 0.35
0.35		 0.65
0.65		 228 (0.122)
252 (0.126)		 850 (0.454)
917 (0.458)		 793 (0.424)
833 (0.416)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs2531716 USA, Australia SZ
CTR		 0.27
0.28		 0.73
0.72		 136 (0.073)
153 (0.076)		 737 (0.394)
800 (0.400)		 997 (0.533)
1049 (0.524)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs3788322 USA, Australia SZ
CTR		 0.38
0.37		 0.62
0.63		 269 (0.144)
268 (0.134)		 880 (0.471)
929 (0.464)		 721 (0.386)
805 (0.402)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs4819526 USA, Australia SZ
CTR		 0.33
0.34		 0.67
0.66		 200 (0.107)
233 (0.116)		 823 (0.440)
900 (0.450)		 847 (0.453)
869 (0.434)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs4819853 USA, Australia SZ
CTR		 0.34
0.34		 0.66
0.66		 214 (0.114)
237 (0.118)		 837 (0.447)
904 (0.451)		 820 (0.438)
862 (0.430)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs7292055 USA, Australia SZ
CTR		 0.33
0.35		 0.67
0.65		 202 (0.108)
241 (0.120)		 826 (0.442)
907 (0.453)		 842 (0.450)
854 (0.427)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs758373 USA, Australia SZ
CTR		 0.05
0.05		 0.95
0.95		 4 (0.002)
6 (0.003)		 168 (0.090)
205 (0.102)		 1698 (0.908)
1792 (0.895)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs758374 USA, Australia SZ
CTR		 0.30
0.30		 0.70
0.70		 167 (0.089)
186 (0.093)		 784 (0.419)
849 (0.424)		 919 (0.491)
967 (0.483)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs877118 USA, Australia SZ
CTR		 0.41
0.40		 0.59
0.60		 308 (0.165)
328 (0.164)		 902 (0.482)
965 (0.482)		 660 (0.353)
709 (0.354)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele G-Allele C/C
(frequency)		 C/G
(frequency)		 G/G
(frequency)
 Caucasian
rs886162 USA, Australia SZ
CTR		 0.46
0.45		 0.54
0.55		 397 (0.212)
407 (0.203)		 929 (0.497)
991 (0.495)		 543 (0.291)
603 (0.301)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs887199 USA, Australia SZ
CTR		 0.14
0.14		 0.86
0.86		 37 (0.020)
42 (0.021)		 453 (0.242)
494 (0.247)		 1380 (0.738)
1467 (0.732)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs887200 USA, Australia SZ
CTR		 0.12
0.12		 0.88
0.88		 28 (0.015)
31 (0.015)		 401 (0.214)
435 (0.217)		 1442 (0.771)
1536 (0.767)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele C-Allele A/A
(frequency)		 A/C
(frequency)		 C/C
(frequency)
 Caucasian
rs9606204 USA, Australia SZ
CTR		 0.28
0.29		 0.72
0.71		 148 (0.079)
167 (0.083)		 756 (0.404)
823 (0.411)		 967 (0.517)
1012 (0.505)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs9618723 USA, Australia SZ
CTR		 0.16
0.17		 0.84
0.83		 50 (0.027)
57 (0.028)		 510 (0.273)
562 (0.281)		 1310 (0.701)
1383 (0.691)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
SZGene Recent Updates
SZGene Stats
Studies: 1727
Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
ALSGene
AlzGene
MSGene
PDGene
SZGene
An up-to-date collection of all published genetic association studies.
SRF News
SRF Comments
Text Size
Reset Text Size
Email this pageEmail this page

Share/Bookmark
Research Participants
Collaborators
Copyright © 2005-2024 Schizophrenia Research Forum Privacy Policy Disclaimer Disclosure Copyright