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Printable version  
Polymorphism Details     
Back Search Methods Disclaimer Credits
 Study: Choudhury, 2007
 Gene: FXYD6   Entrez Gene
 Protein: FXYD domain-containing ion transport regulator 6  (phosphohippolin)  ProteinLink
 Chromosome: 11   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 21 October 2010
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 25

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs10892181 UK (UCL) SZ
CTR		 0.35
0.37		 0.65
0.63		 56 (0.123)
64 (0.133)		 208 (0.455)
223 (0.465)		 193 (0.422)
193 (0.402)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs2019655 UK (UCL) SZ
CTR		 0.25
0.24		 0.75
0.76		 29 (0.064)
25 (0.057)		 171 (0.379)
158 (0.362)		 251 (0.557)
253 (0.580)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs10790212 UK (UCL) SZ
CTR		 0.26
0.27		 0.74
0.73		 30 (0.067)
33 (0.075)		 172 (0.383)
174 (0.395)		 247 (0.550)
233 (0.530)
rs10790212 UK (Scotland) SZ
CTR		 0.25
0.26		 0.75
0.74		 53 (0.064)
38 (0.066)		 314 (0.378)
220 (0.381)		 464 (0.558)
320 (0.554)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs3087563 UK (UCL) SZ
CTR		 0.47
0.48		 0.53
0.52		 100 (0.223)
99 (0.229)		 223 (0.498)
216 (0.500)		 125 (0.279)
117 (0.271)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs3168238 UK (UCL) SZ
CTR		 0.05
0.08		 0.95
0.92		 1 (0.002)
3 (0.006)		 45 (0.096)
70 (0.147)		 421 (0.901)
402 (0.846)
rs3168238 UK (Scotland) SZ
CTR		 0.06
0.04		 0.94
0.96		 3 (0.004)
1 (0.002)		 87 (0.105)
45 (0.078)		 736 (0.891)
529 (0.920)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs564989 UK (UCL) SZ
CTR		 0.24
0.23		 0.76
0.77		 27 (0.058)
26 (0.054)		 172 (0.367)
171 (0.354)		 270 (0.576)
286 (0.592)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs12363888 UK (UCL) SZ
CTR		 0.05
0.06		 0.95
0.94		 1 (0.002)
2 (0.004)		 50 (0.104)
52 (0.108)		 429 (0.894)
428 (0.888)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs11608153 UK (UCL) SZ
CTR		 0.13
0.14		 0.88
0.86		 7 (0.015)
9 (0.019)		 101 (0.220)
111 (0.234)		 352 (0.765)
355 (0.747)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs512481 UK (UCL) SZ
CTR		 0.46
0.48		 0.54
0.52		 97 (0.208)
108 (0.228)		 231 (0.496)
236 (0.499)		 138 (0.296)
129 (0.273)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs476130 UK (UCL) SZ
CTR		 0.08
0.07		 0.92
0.93		 3 (0.006)
3 (0.006)		 71 (0.153)
65 (0.135)		 391 (0.841)
413 (0.859)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   n.a.-Allele n.a.-Allele n.a./n.a.
(frequency)		 n.a./n.a.
(frequency)		 n.a./n.a.
(frequency)
 Caucasian
FXYD6_TTTC20.2 UK (UCL) SZ
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs7121573 UK (UCL) SZ
CTR		 0.36
0.40		 0.64
0.60		 60 (0.132)
77 (0.163)		 211 (0.464)
228 (0.482)		 184 (0.404)
168 (0.355)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele G-Allele C/C
(frequency)		 C/G
(frequency)		 G/G
(frequency)
 Caucasian
rs1815774 UK (UCL) SZ
CTR		 0.35
0.39		 0.65
0.61		 54 (0.121)
67 (0.154)		 203 (0.454)
208 (0.478)		 190 (0.425)
160 (0.368)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs876798 UK (UCL) SZ
CTR		 0.13
0.14		 0.87
0.86		 8 (0.017)
9 (0.021)		 107 (0.233)
107 (0.248)		 345 (0.750)
316 (0.731)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele C-Allele A/A
(frequency)		 A/C
(frequency)		 C/C
(frequency)
 Caucasian
rs876797 UK (UCL) SZ
CTR		 0.21
0.24		 0.79
0.76		 19 (0.042)
25 (0.058)		 148 (0.330)
157 (0.366)		 282 (0.628)
247 (0.576)
rs876797 UK (Scotland) SZ
CTR		 0.21
0.22		 0.79
0.78		 35 (0.043)
28 (0.049)		 267 (0.327)
195 (0.344)		 514 (0.630)
344 (0.607)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele T-Allele A/A
(frequency)		 A/T
(frequency)		 T/T
(frequency)
 Caucasian
rs873713 UK (UCL) SZ
CTR		 0.21
0.24		 0.79
0.76		 21 (0.045)
28 (0.060)		 155 (0.333)
174 (0.370)		 289 (0.622)
268 (0.570)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs10790218 UK (UCL) SZ
CTR		 0.36
0.39		 0.64
0.61		 60 (0.128)
74 (0.155)		 215 (0.458)
227 (0.477)		 194 (0.414)
175 (0.368)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs4938445 UK (UCL) SZ
CTR		 0.28
0.34		 0.72
0.66		 35 (0.080)
51 (0.116)		 179 (0.407)
197 (0.449)		 226 (0.514)
191 (0.435)
rs4938445 UK (Scotland) SZ
CTR		 0.30
0.33		 0.70
0.67		 72 (0.088)
62 (0.108)		 341 (0.418)
253 (0.441)		 402 (0.493)
259 (0.451)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele T-Allele A/A
(frequency)		 A/T
(frequency)		 T/T
(frequency)
 Caucasian
rs4938446 UK (UCL) SZ
CTR		 0.29
0.34		 0.71
0.66		 40 (0.086)
51 (0.118)		 192 (0.414)
195 (0.449)		 232 (0.500)
188 (0.433)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs11216598 UK (UCL) SZ
CTR		 0.17
0.17		 0.83
0.83		 13 (0.028)
13 (0.030)		 128 (0.276)
124 (0.282)		 322 (0.695)
302 (0.688)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs631898 UK (UCL) SZ
CTR		 0.52
0.48		 0.48
0.52		 121 (0.268)
101 (0.232)		 225 (0.499)
217 (0.499)		 105 (0.233)
117 (0.269)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele C-Allele G/G
(frequency)		 G/C
(frequency)		 C/C
(frequency)
 Caucasian
rs11605223 UK (UCL) SZ
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele C-Allele G/G
(frequency)		 G/C
(frequency)		 C/C
(frequency)
 Caucasian
rs3809043 UK (UCL) SZ
CTR		 0.04
0.03		 0.96
0.97		 1 (0.002)
0 (0.000)		 33 (0.071)
28 (0.059)		 433 (0.927)
450 (0.941)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele G-Allele C/C
(frequency)		 C/G
(frequency)		 G/G
(frequency)
 Caucasian
rs3809042 UK (UCL) SZ
CTR		 0.02
0.03		 0.98
0.97		 0 (0.000)
0 (0.000)		 22 (0.048)
26 (0.055)		 438 (0.952)
449 (0.945)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele G-Allele C/C
(frequency)		 C/G
(frequency)		 G/G
(frequency)
 Caucasian
rs497768 UK (UCL) SZ
CTR		 0.40
0.45		 0.60
0.55		 74 (0.161)
94 (0.206)		 222 (0.482)
227 (0.497)		 165 (0.358)
136 (0.298)
rs497768 UK (Scotland) SZ
CTR		 0.42
0.45		 0.58
0.55		 141 (0.174)
118 (0.204)		 394 (0.486)
286 (0.495)		 275 (0.340)
174 (0.301)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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