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Polymorphism Details     
Back Search Methods Disclaimer Credits
 Study: Choudhury, 2007
 Gene: FXYD2  (HOMG2; ATP1G1)  Entrez Gene    View on MSGene
 Protein: FXYD domain-containing ion transport regulator 2  (hypomagnesemia 2, renal; Sodium-potassium-ATPase, gamma polypeptide; ATPase, Na+/K+ transporting, gamma 1 polypeptide)  ProteinLink
 Chromosome: 11   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 24 February 2010
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 8

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele A-Allele C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
 Caucasian
rs11999 UK (UCL) SZ
CTR
0.34
0.36
0.66
0.64
44 (0.113)
53 (0.126)
174 (0.445)
193 (0.458)
173 (0.442)
175 (0.416)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs869789 UK (UCL) SZ
CTR
0.15
0.13
0.85
0.87
11 (0.024)
7 (0.016)
117 (0.257)
94 (0.218)
327 (0.719)
330 (0.766)
rs869789 UK (Scotland) SZ
CTR
0.17
0.15
0.83
0.85
24 (0.029)
13 (0.022)
234 (0.281)
147 (0.254)
575 (0.690)
419 (0.724)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs4579962 UK (UCL) SZ
CTR
0.28
0.28
0.72
0.72
37 (0.078)
39 (0.081)
191 (0.404)
196 (0.407)
245 (0.518)
246 (0.511)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs529623 UK (UCL) SZ
CTR
0.47
0.46
0.53
0.54
101 (0.224)
90 (0.207)
225 (0.499)
215 (0.495)
125 (0.277)
129 (0.297)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs678776 UK (UCL) SZ
CTR
0.30
0.30
0.70
0.70
42 (0.089)
42 (0.088)
198 (0.418)
200 (0.418)
234 (0.494)
236 (0.494)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs479991 UK (UCL) SZ
CTR
0.21
0.23
0.79
0.77
19 (0.042)
23 (0.053)
148 (0.328)
152 (0.353)
284 (0.630)
256 (0.594)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   n.a.-Allele n.a.-Allele n.a./n.a.
(frequency)
n.a./n.a.
(frequency)
n.a./n.a.
(frequency)
 Caucasian
D11S1998 UK (UCL) SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs11216567 UK (UCL) SZ
CTR
0.10
0.07
0.90
0.93
4 (0.009)
2 (0.004)
81 (0.176)
65 (0.137)
374 (0.815)
408 (0.859)
rs11216567 UK (Scotland) SZ
CTR
0.08
0.09
0.92
0.91
5 (0.006)
5 (0.009)
118 (0.143)
98 (0.171)
705 (0.851)
471 (0.821)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
SZGene Recent Updates
SZGene Stats
Studies: 1727
Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
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An up-to-date collection of all published genetic association studies.
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