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Polymorphism Details
Study:
Buxbaum, 2007
Gene:
MAGI3
(RP4-730K3.1)
Protein:
membrane-associated guanylate kinase-related 3
Chromosome:
1
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 30 April 2007
Total number of polymorphisms investigated by this study: 15
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs7546465
UK, Ireland (I)
SZ
CTR
0.29
0.31
0.71
0.69
53 (0.082)
67 (0.094)
264 (0.407)
302 (0.424)
331 (0.511)
343 (0.482)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs4074284
UK, Ireland (I)
SZ
CTR
0.17
0.15
0.83
0.85
18 (0.028)
16 (0.022)
180 (0.278)
180 (0.252)
450 (0.694)
517 (0.725)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
G-Allele
T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
Caucasian
rs6688827
UK, Ireland (I)
SZ
CTR
0.27
0.24
0.73
0.76
46 (0.071)
40 (0.056)
254 (0.392)
257 (0.360)
348 (0.537)
416 (0.583)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs2359412
UK, Ireland (I)
SZ
CTR
0.27
0.26
0.73
0.74
49 (0.076)
49 (0.069)
258 (0.398)
276 (0.388)
341 (0.526)
387 (0.544)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs2153977
UK, Ireland (I)
SZ
CTR
0.31
0.32
0.69
0.68
61 (0.094)
74 (0.104)
276 (0.427)
311 (0.437)
310 (0.479)
327 (0.459)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs4456089
UK, Ireland (I)
SZ
CTR
0.24
0.22
0.76
0.78
38 (0.059)
36 (0.051)
238 (0.367)
248 (0.348)
372 (0.574)
428 (0.601)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs4259646
UK, Ireland (I)
SZ
CTR
0.39
0.38
0.61
0.62
100 (0.154)
102 (0.143)
309 (0.476)
335 (0.471)
240 (0.370)
275 (0.386)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
A-Allele
C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
Caucasian
rs12035317
UK, Ireland (I)
SZ
CTR
0.24
0.21
0.76
0.79
36 (0.056)
32 (0.045)
234 (0.362)
237 (0.333)
377 (0.583)
443 (0.622)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
A-Allele
T/T
(frequency)
T/A
(frequency)
A/A
(frequency)
Caucasian
rs1343126
UK, Ireland (I)
SZ
CTR
0.29
0.30
0.71
0.70
55 (0.085)
66 (0.093)
268 (0.414)
301 (0.423)
325 (0.502)
345 (0.485)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs11102660
UK, Ireland (I)
SZ
CTR
0.20
0.19
0.80
0.81
26 (0.040)
26 (0.037)
207 (0.319)
221 (0.310)
415 (0.640)
465 (0.653)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs3761931
UK, Ireland (I)
SZ
CTR
0.28
0.28
0.72
0.72
52 (0.080)
54 (0.076)
263 (0.406)
284 (0.399)
333 (0.514)
374 (0.525)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs1230666
UK, Ireland (I)
SZ
CTR
0.19
0.18
0.81
0.82
23 (0.036)
23 (0.032)
199 (0.308)
208 (0.292)
425 (0.657)
481 (0.676)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs1743594
UK, Ireland (I)
SZ
CTR
0.27
0.28
0.73
0.72
46 (0.071)
57 (0.080)
254 (0.392)
290 (0.407)
348 (0.537)
365 (0.513)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
T-Allele
G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
Caucasian
rs12119076
UK, Ireland (I)
SZ
CTR
0.23
0.23
0.77
0.77
33 (0.051)
39 (0.055)
226 (0.349)
254 (0.357)
389 (0.600)
419 (0.588)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs3752954
UK, Ireland (I)
SZ
CTR
0.30
0.29
0.70
0.71
57 (0.088)
62 (0.087)
271 (0.418)
296 (0.415)
320 (0.494)
355 (0.498)
SZGene Recent Updates
SZGene Stats
Studies: 1727
Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
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An up-to-date collection of all published genetic association studies.
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