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Polymorphism Details
Study:
Buxbaum, 2007
Gene:
MAGI1
(AIP3; BAP1; WWP3; BAIAP1; TNRC19)
Protein:
membrane associated guanylate kinase, WW and PDZ domain containing 1
(BAI1-associated protein 1; WW domain-containing protein 3; atrophin-1 interacting protein 3; trinucleotide repeat-containing gene 19; membrane associated guanylate kinase inverted-1)
Chromosome:
3
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 16 January 2010
Total number of polymorphisms investigated by this study: 16
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs3772193
UK, Ireland (I)
SZ
CTR
0.41
0.44
0.59
0.56
107 (0.165)
135 (0.190)
313 (0.483)
350 (0.492)
228 (0.352)
227 (0.319)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs17417167
UK, Ireland (I)
SZ
CTR
0.48
0.50
0.52
0.50
151 (0.233)
179 (0.251)
324 (0.500)
356 (0.500)
173 (0.267)
177 (0.249)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs2306379
UK, Ireland (I)
SZ
CTR
0.22
0.21
0.78
0.79
31 (0.048)
33 (0.046)
220 (0.340)
240 (0.337)
397 (0.613)
439 (0.617)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs13086093
UK, Ireland (I)
SZ
CTR
0.31
0.31
0.69
0.69
61 (0.094)
70 (0.098)
276 (0.427)
306 (0.430)
310 (0.479)
336 (0.472)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
C-Allele
A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
Caucasian
rs4446163
UK, Ireland (I)
SZ
CTR
0.48
0.52
0.52
0.48
149 (0.230)
190 (0.266)
323 (0.499)
356 (0.499)
175 (0.270)
167 (0.234)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
G-Allele
T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
Caucasian
rs11712543
UK, Ireland (I)
SZ
CTR
0.34
0.38
0.66
0.62
76 (0.117)
101 (0.142)
292 (0.450)
334 (0.469)
281 (0.433)
277 (0.389)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs7615097
UK, Ireland (I)
SZ
CTR
0.12
0.13
0.88
0.87
9 (0.014)
13 (0.018)
134 (0.207)
166 (0.233)
505 (0.779)
533 (0.749)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
G-Allele
T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
Caucasian
rs9837844
UK, Ireland (I)
SZ
CTR
0.30
0.33
0.70
0.67
59 (0.091)
79 (0.111)
273 (0.421)
317 (0.445)
316 (0.488)
316 (0.444)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs6798518
UK, Ireland (I)
SZ
CTR
0.29
0.25
0.71
0.75
56 (0.086)
46 (0.065)
269 (0.415)
271 (0.381)
323 (0.498)
395 (0.555)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
T-Allele
A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
Caucasian
rs4402868
UK, Ireland (I)
SZ
CTR
0.31
0.32
0.69
0.68
61 (0.094)
74 (0.104)
276 (0.427)
311 (0.437)
310 (0.479)
327 (0.459)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs12635983
UK, Ireland (I)
SZ
CTR
0.37
0.39
0.63
0.61
87 (0.134)
107 (0.150)
301 (0.465)
338 (0.475)
260 (0.401)
267 (0.375)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs7614228
UK, Ireland (I)
SZ
CTR
0.27
0.25
0.73
0.75
46 (0.071)
46 (0.065)
254 (0.392)
269 (0.379)
348 (0.537)
395 (0.556)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs6775267
UK, Ireland (I)
SZ
CTR
0.38
0.38
0.62
0.62
94 (0.145)
105 (0.147)
305 (0.471)
337 (0.473)
249 (0.384)
270 (0.379)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
G-Allele
C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
Caucasian
rs2204401
UK, Ireland (I)
SZ
CTR
0.34
0.36
0.66
0.64
77 (0.119)
94 (0.132)
293 (0.452)
329 (0.462)
278 (0.429)
289 (0.406)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs1524967
UK, Ireland (I)
SZ
CTR
0.45
0.47
0.55
0.53
129 (0.199)
160 (0.225)
320 (0.494)
355 (0.499)
199 (0.307)
197 (0.277)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
T-Allele
A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
Caucasian
rs17074330
UK, Ireland (I)
SZ
CTR
0.12
0.11
0.88
0.89
9 (0.014)
9 (0.013)
134 (0.207)
144 (0.202)
505 (0.779)
559 (0.785)
SZGene Recent Updates
SZGene Stats
Studies: 1727
Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
ALSGene
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An up-to-date collection of all published genetic association studies.
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