Schizophrenia Research Forum - A Catalyst for Creative Thinking
Home Your Profile Become a Member/Get Newsletter Contact Us
What's New
Recent Updates
SRF Papers
Current Papers
Search All Papers
Search Comments
News
Research News
Forums
Current Hypotheses
Idea Lab
Online Discussions
Virtual Conferences
Interviews
Tech Corner
Resources
What We Know
SchizophreniaGene
Animal Models
Drugs in Trials
Research Tools
Grants
Jobs
Conferences
Journals
Community Calendar
General Information
Community
Member Directory
Researcher Profiles
Institutes and Labs
About the Site
Mission
History
SRF Team
Advisory Board
Support Us
How to Cite
Fan (E)Mail
The Schizophrenia Research Forum web site is sponsored by NARSAD, the Brain and Behavior Research Fund, and was created with funding from the U.S. National Institute of Mental Health.
Printable version  
Polymorphism Details     
Back Search Methods Disclaimer Credits
 Study: Buxbaum, 2007
 Gene: PTPRZ1  (PTPZ; HPTPZ; PTP18; PTPRZ; RPTPB; HPTPzeta; RPTPbeta; phosphacan)  Entrez Gene
 Protein: protein tyrosine phosphatase, receptor-type, zeta1  (receptor-type tyrosine phosphatase beta/zeta)  ProteinLink
 Chromosome: 7   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 17 January 2010
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 29

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs740965 UK, Ireland (II) SZ
CTR		 0.17
0.15		 0.83
0.85		 18 (0.027)
15 (0.021)		 182 (0.276)
177 (0.251)		 460 (0.697)
514 (0.728)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs12706382 UK, Ireland (II) SZ
CTR		 0.12
0.13		 0.88
0.87		 9 (0.014)
11 (0.016)		 137 (0.208)
153 (0.219)		 513 (0.778)
534 (0.765)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele G-Allele C/C
(frequency)		 C/G
(frequency)		 G/G
(frequency)
 Caucasian
rs13437930 UK, Ireland (II) SZ
CTR		 0.10
0.11		 0.90
0.89		 6 (0.009)
8 (0.011)		 116 (0.178)
133 (0.188)		 528 (0.812)
566 (0.801)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs2402593 UK, Ireland (II) SZ
CTR		 0.23
0.24		 0.77
0.76		 36 (0.054)
39 (0.055)		 237 (0.356)
256 (0.361)		 392 (0.589)
414 (0.584)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2191783 UK, Ireland (II) SZ
CTR		 0.16
0.15		 0.84
0.85		 18 (0.027)
16 (0.023)		 183 (0.275)
182 (0.256)		 464 (0.698)
512 (0.721)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele G-Allele C/C
(frequency)		 C/G
(frequency)		 G/G
(frequency)
 Caucasian
rs1206477 UK, Ireland (II) SZ
CTR		 0.45
0.45		 0.55
0.55		 135 (0.204)
146 (0.207)		 328 (0.495)
351 (0.496)		 199 (0.301)
210 (0.297)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs6946211 UK, Ireland (II) SZ
CTR		 0.16
0.14		 0.84
0.86		 16 (0.024)
14 (0.020)		 175 (0.265)
169 (0.238)		 470 (0.711)
528 (0.743)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs1011692 UK, Ireland (II) SZ
CTR		 0.14
0.13		 0.86
0.87		 13 (0.020)
11 (0.016)		 159 (0.245)
156 (0.220)		 477 (0.735)
542 (0.764)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs1206504 UK, Ireland (II) SZ
CTR		 0.45
0.42		 0.55
0.58		 132 (0.199)
127 (0.179)		 327 (0.494)
346 (0.489)		 203 (0.307)
235 (0.332)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs6466808 UK, Ireland (II) SZ
CTR		 0.32
0.38		 0.68
0.62		 69 (0.104)
162 (0.145)		 290 (0.438)
528 (0.471)		 303 (0.458)
431 (0.384)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele G-Allele C/C
(frequency)		 C/G
(frequency)		 G/G
(frequency)
 Caucasian
rs1196487 UK, Ireland (II) SZ
CTR		 0.48
0.44		 0.52
0.56		 151 (0.228)
138 (0.196)		 330 (0.498)
348 (0.494)		 181 (0.273)
219 (0.311)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs6970897 UK, Ireland (II) SZ
CTR		 0.10
0.08		 0.90
0.92		 7 (0.011)
5 (0.007)		 119 (0.183)
108 (0.153)		 526 (0.807)
592 (0.840)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs10278079 UK, Ireland (II) SZ
CTR		 0.30
0.35		 0.70
0.65		 60 (0.091)
162 (0.126)		 277 (0.422)
589 (0.458)		 320 (0.487)
535 (0.416)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs1725058 UK, Ireland (II) SZ
CTR		 0.17
0.16		 0.83
0.84		 18 (0.027)
18 (0.025)		 184 (0.278)
188 (0.266)		 460 (0.695)
500 (0.708)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs1196477 UK, Ireland (II) SZ
CTR		 0.39
0.40		 0.61
0.60		 97 (0.148)
110 (0.157)		 310 (0.474)
335 (0.479)		 247 (0.378)
255 (0.364)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs3817483 UK, Ireland (II) SZ
CTR		 0.12
0.13		 0.88
0.87		 9 (0.014)
13 (0.018)		 136 (0.205)
164 (0.231)		 520 (0.782)
534 (0.751)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs13241278 UK, Ireland (II) SZ
CTR		 0.48
0.53		 0.52
0.47		 136 (0.229)
357 (0.282)		 296 (0.498)
631 (0.498)		 162 (0.273)
279 (0.220)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs1196471 UK, Ireland (II) SZ
CTR		 0.33
0.38		 0.67
0.62		 64 (0.108)
95 (0.141)		 262 (0.441)
315 (0.468)		 268 (0.451)
263 (0.391)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs2693657 UK, Ireland (II) SZ
CTR		 0.33
0.37		 0.67
0.63		 64 (0.107)
174 (0.136)		 262 (0.440)
597 (0.466)		 270 (0.453)
510 (0.398)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs1196473 UK, Ireland (II) SZ
CTR		 0.13
0.13		 0.87
0.87		 11 (0.017)
13 (0.018)		 150 (0.226)
164 (0.231)		 503 (0.758)
533 (0.751)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs1147504 UK, Ireland (II) SZ
CTR		 0.46
0.49		 0.54
0.51		 143 (0.215)
173 (0.243)		 331 (0.498)
355 (0.499)		 191 (0.287)
183 (0.257)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs1916890 UK, Ireland (II) SZ
CTR		 0.11
0.13		 0.89
0.87		 8 (0.012)
11 (0.016)		 129 (0.197)
156 (0.222)		 518 (0.791)
536 (0.762)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele G-Allele T/T
(frequency)		 T/G
(frequency)		 G/G
(frequency)
 Caucasian
rs1147502 UK, Ireland (II) SZ
CTR		 0.46
0.50		 0.54
0.50		 142 (0.215)
332 (0.252)		 329 (0.497)
658 (0.500)		 191 (0.289)
327 (0.248)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele A-Allele C/C
(frequency)		 C/A
(frequency)		 A/A
(frequency)
 Caucasian
rs1147498 UK, Ireland (II) SZ
CTR		 0.17
0.18		 0.83
0.82		 19 (0.029)
23 (0.032)		 185 (0.278)
209 (0.295)		 462 (0.694)
476 (0.672)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs1147497 UK, Ireland (II) SZ
CTR		 0.35
0.39		 0.65
0.61		 80 (0.123)
107 (0.152)		 296 (0.456)
335 (0.477)		 273 (0.421)
261 (0.371)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs1147492 UK, Ireland (II) SZ
CTR		 0.49
0.46		 0.51
0.54		 153 (0.238)
147 (0.210)		 321 (0.499)
348 (0.496)		 169 (0.263)
206 (0.294)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs1147489 UK, Ireland (II) SZ
CTR		 0.24
0.27		 0.76
0.73		 37 (0.058)
51 (0.073)		 234 (0.364)
276 (0.393)		 372 (0.579)
375 (0.534)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs17144057 UK, Ireland (II) SZ
CTR		 0.12
0.13		 0.88
0.87		 9 (0.014)
11 (0.016)		 139 (0.210)
156 (0.220)		 514 (0.776)
542 (0.764)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele A-Allele C/C
(frequency)		 C/A
(frequency)		 A/A
(frequency)
 Caucasian
rs1206381 UK, Ireland (II) SZ
CTR		 0.37
0.41		 0.63
0.59		 91 (0.139)
120 (0.171)		 306 (0.469)
340 (0.484)		 256 (0.392)
242 (0.345)
SZGene Recent Updates
SZGene Stats
Studies: 1727
Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
ALSGene
AlzGene
MSGene
PDGene
SZGene
An up-to-date collection of all published genetic association studies.
SRF News
SRF Comments
Text Size
Reset Text Size
Email this pageEmail this page

Share/Bookmark
Research Participants
Collaborators
Copyright © 2005-2024 Schizophrenia Research Forum Privacy Policy Disclaimer Disclosure Copyright