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Polymorphism Details     
Back Search Methods Disclaimer Credits
 Study: Buxbaum, 2007
 Gene: PTPRZ1  (PTPZ; HPTPZ; PTP18; PTPRZ; RPTPB; HPTPzeta; RPTPbeta; phosphacan)  Entrez Gene
 Protein: protein tyrosine phosphatase, receptor-type, zeta1  (receptor-type tyrosine phosphatase beta/zeta)  ProteinLink
 Chromosome: 7   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 17 January 2010
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 29

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele T-Allele G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
 Caucasian
rs740965 UK, Ireland (II) SZ
CTR
0.17
0.15
0.83
0.85
18 (0.027)
15 (0.021)
182 (0.276)
177 (0.251)
460 (0.697)
514 (0.728)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs12706382 UK, Ireland (II) SZ
CTR
0.12
0.13
0.88
0.87
9 (0.014)
11 (0.016)
137 (0.208)
153 (0.219)
513 (0.778)
534 (0.765)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele G-Allele C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
 Caucasian
rs13437930 UK, Ireland (II) SZ
CTR
0.10
0.11
0.90
0.89
6 (0.009)
8 (0.011)
116 (0.178)
133 (0.188)
528 (0.812)
566 (0.801)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs2402593 UK, Ireland (II) SZ
CTR
0.23
0.24
0.77
0.76
36 (0.054)
39 (0.055)
237 (0.356)
256 (0.361)
392 (0.589)
414 (0.584)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs2191783 UK, Ireland (II) SZ
CTR
0.16
0.15
0.84
0.85
18 (0.027)
16 (0.023)
183 (0.275)
182 (0.256)
464 (0.698)
512 (0.721)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele G-Allele C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
 Caucasian
rs1206477 UK, Ireland (II) SZ
CTR
0.45
0.45
0.55
0.55
135 (0.204)
146 (0.207)
328 (0.495)
351 (0.496)
199 (0.301)
210 (0.297)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs6946211 UK, Ireland (II) SZ
CTR
0.16
0.14
0.84
0.86
16 (0.024)
14 (0.020)
175 (0.265)
169 (0.238)
470 (0.711)
528 (0.743)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs1011692 UK, Ireland (II) SZ
CTR
0.14
0.13
0.86
0.87
13 (0.020)
11 (0.016)
159 (0.245)
156 (0.220)
477 (0.735)
542 (0.764)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs1206504 UK, Ireland (II) SZ
CTR
0.45
0.42
0.55
0.58
132 (0.199)
127 (0.179)
327 (0.494)
346 (0.489)
203 (0.307)
235 (0.332)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs6466808 UK, Ireland (II) SZ
CTR
0.32
0.38
0.68
0.62
69 (0.104)
162 (0.145)
290 (0.438)
528 (0.471)
303 (0.458)
431 (0.384)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele G-Allele C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
 Caucasian
rs1196487 UK, Ireland (II) SZ
CTR
0.48
0.44
0.52
0.56
151 (0.228)
138 (0.196)
330 (0.498)
348 (0.494)
181 (0.273)
219 (0.311)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs6970897 UK, Ireland (II) SZ
CTR
0.10
0.08
0.90
0.92
7 (0.011)
5 (0.007)
119 (0.183)
108 (0.153)
526 (0.807)
592 (0.840)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs10278079 UK, Ireland (II) SZ
CTR
0.30
0.35
0.70
0.65
60 (0.091)
162 (0.126)
277 (0.422)
589 (0.458)
320 (0.487)
535 (0.416)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs1725058 UK, Ireland (II) SZ
CTR
0.17
0.16
0.83
0.84
18 (0.027)
18 (0.025)
184 (0.278)
188 (0.266)
460 (0.695)
500 (0.708)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs1196477 UK, Ireland (II) SZ
CTR
0.39
0.40
0.61
0.60
97 (0.148)
110 (0.157)
310 (0.474)
335 (0.479)
247 (0.378)
255 (0.364)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs3817483 UK, Ireland (II) SZ
CTR
0.12
0.13
0.88
0.87
9 (0.014)
13 (0.018)
136 (0.205)
164 (0.231)
520 (0.782)
534 (0.751)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs13241278 UK, Ireland (II) SZ
CTR
0.48
0.53
0.52
0.47
136 (0.229)
357 (0.282)
296 (0.498)
631 (0.498)
162 (0.273)
279 (0.220)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs1196471 UK, Ireland (II) SZ
CTR
0.33
0.38
0.67
0.62
64 (0.108)
95 (0.141)
262 (0.441)
315 (0.468)
268 (0.451)
263 (0.391)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs2693657 UK, Ireland (II) SZ
CTR
0.33
0.37
0.67
0.63
64 (0.107)
174 (0.136)
262 (0.440)
597 (0.466)
270 (0.453)
510 (0.398)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs1196473 UK, Ireland (II) SZ
CTR
0.13
0.13
0.87
0.87
11 (0.017)
13 (0.018)
150 (0.226)
164 (0.231)
503 (0.758)
533 (0.751)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs1147504 UK, Ireland (II) SZ
CTR
0.46
0.49
0.54
0.51
143 (0.215)
173 (0.243)
331 (0.498)
355 (0.499)
191 (0.287)
183 (0.257)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs1916890 UK, Ireland (II) SZ
CTR
0.11
0.13
0.89
0.87
8 (0.012)
11 (0.016)
129 (0.197)
156 (0.222)
518 (0.791)
536 (0.762)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Caucasian
rs1147502 UK, Ireland (II) SZ
CTR
0.46
0.50
0.54
0.50
142 (0.215)
332 (0.252)
329 (0.497)
658 (0.500)
191 (0.289)
327 (0.248)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele A-Allele C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
 Caucasian
rs1147498 UK, Ireland (II) SZ
CTR
0.17
0.18
0.83
0.82
19 (0.029)
23 (0.032)
185 (0.278)
209 (0.295)
462 (0.694)
476 (0.672)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele T-Allele G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
 Caucasian
rs1147497 UK, Ireland (II) SZ
CTR
0.35
0.39
0.65
0.61
80 (0.123)
107 (0.152)
296 (0.456)
335 (0.477)
273 (0.421)
261 (0.371)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs1147492 UK, Ireland (II) SZ
CTR
0.49
0.46
0.51
0.54
153 (0.238)
147 (0.210)
321 (0.499)
348 (0.496)
169 (0.263)
206 (0.294)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs1147489 UK, Ireland (II) SZ
CTR
0.24
0.27
0.76
0.73
37 (0.058)
51 (0.073)
234 (0.364)
276 (0.393)
372 (0.579)
375 (0.534)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele T-Allele G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
 Caucasian
rs17144057 UK, Ireland (II) SZ
CTR
0.12
0.13
0.88
0.87
9 (0.014)
11 (0.016)
139 (0.210)
156 (0.220)
514 (0.776)
542 (0.764)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele A-Allele C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
 Caucasian
rs1206381 UK, Ireland (II) SZ
CTR
0.37
0.41
0.63
0.59
91 (0.139)
120 (0.171)
306 (0.469)
340 (0.484)
256 (0.392)
242 (0.345)
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