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Polymorphism Details     
Back Search Methods Disclaimer Credits
 Study: Jungerius, 2007
 Gene: PTPRZ1  (PTPZ; HPTPZ; PTP18; PTPRZ; RPTPB; HPTPzeta; RPTPbeta; phosphacan)  Entrez Gene
 Protein: protein tyrosine phosphatase, receptor-type, zeta1  (receptor-type tyrosine phosphatase beta/zeta)  ProteinLink
 Chromosome: 7   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 17 January 2010
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 11

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs1196475 Netherlands SZ
CTR		 0.43
0.37		 0.57
0.63		 57 (0.183)
71 (0.137)		 152 (0.489)
242 (0.467)		 102 (0.328)
205 (0.396)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs740965 Netherlands SZ
CTR		 0.15
0.16		 0.85
0.84		 7 (0.023)
14 (0.027)		 78 (0.251)
141 (0.272)		 226 (0.727)
364 (0.701)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs2402593 Netherlands SZ
CTR		 0.28
0.28		 0.72
0.72		 24 (0.078)
40 (0.077)		 125 (0.405)
209 (0.403)		 160 (0.518)
270 (0.520)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele G-Allele T/T
(frequency)		 T/G
(frequency)		 G/G
(frequency)
 Caucasian
rs1147502 Netherlands SZ
CTR		 0.56
0.50		 0.44
0.50		 96 (0.310)
128 (0.247)		 153 (0.494)
259 (0.499)		 61 (0.197)
132 (0.254)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs1147489 Netherlands SZ
CTR		 0.28
0.26		 0.72
0.74		 25 (0.081)
35 (0.067)		 126 (0.408)
199 (0.383)		 158 (0.511)
286 (0.550)


Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs1206383 Netherlands SZ
CTR		 0.08
0.10		 0.92
0.90		 2 (0.006)
5 (0.010)		 45 (0.145)
90 (0.173)		 263 (0.848)
426 (0.818)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs1209633 Netherlands SZ
CTR		 0.17
0.16		 0.83
0.84		 9 (0.029)
13 (0.025)		 89 (0.287)
139 (0.267)		 212 (0.684)
368 (0.708)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele G-Allele T/T
(frequency)		 T/G
(frequency)		 G/G
(frequency)
 Caucasian
rs1526314 Netherlands SZ
CTR		 0.37
0.43		 0.63
0.57		 43 (0.139)
96 (0.184)		 145 (0.469)
255 (0.489)		 121 (0.392)
170 (0.326)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs2177510 Netherlands SZ
CTR		 0.12
0.11		 0.88
0.89		 4 (0.013)
6 (0.012)		 64 (0.207)
102 (0.196)		 241 (0.780)
412 (0.792)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs3801374 Netherlands SZ
CTR		 0.18
0.17		 0.82
0.83		 10 (0.032)
16 (0.031)		 92 (0.297)
149 (0.287)		 208 (0.671)
355 (0.683)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs960930 Netherlands SZ
CTR		 0.13
0.15		 0.87
0.85		 5 (0.016)
11 (0.021)		 71 (0.230)
129 (0.248)		 233 (0.754)
380 (0.731)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
SZGene Recent Updates
SZGene Stats
Studies: 1727
Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
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An up-to-date collection of all published genetic association studies.
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