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Polymorphism Details     
Back Search Methods Disclaimer Credits
 Study: Ito, 2008
 Gene: PTPRZ1  (PTPZ; HPTPZ; PTP18; PTPRZ; RPTPB; HPTPzeta; RPTPbeta; phosphacan)  Entrez Gene
 Protein: protein tyrosine phosphatase, receptor-type, zeta1  (receptor-type tyrosine phosphatase beta/zeta)  ProteinLink
 Chromosome: 7   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 17 January 2010
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 29

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs1196511 Japan SZ
CTR
0.48
0.51
0.52
0.49
117 (0.207)
212 (0.279)
306 (0.542)
358 (0.470)
142 (0.251)
191 (0.251)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs1196474 Japan SZ
CTR
0.69
0.70
0.31
0.30
273 (0.482)
379 (0.498)
236 (0.417)
304 (0.399)
57 (0.101)
78 (0.102)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele G-Allele C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
 Asian
rs13437930 Japan SZ
CTR
0.16
0.15
0.84
0.85
17 (0.030)
24 (0.031)
150 (0.265)
179 (0.235)
399 (0.705)
559 (0.734)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs2402593 Japan SZ
CTR
0.31
0.28
0.69
0.72
53 (0.094)
59 (0.077)
239 (0.424)
303 (0.398)
272 (0.482)
400 (0.525)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele G-Allele C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
 Asian
rs1206477 Japan SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs1011692 Japan SZ
CTR
0.24
0.24
0.76
0.76
26 (0.046)
46 (0.060)
220 (0.390)
272 (0.357)
318 (0.564)
443 (0.582)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs6466808 Japan SZ
CTR
0.34
0.32
0.66
0.68
72 (0.127)
80 (0.105)
238 (0.421)
323 (0.426)
255 (0.451)
356 (0.469)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs10278079 Japan SZ
CTR
0.32
0.29
0.68
0.71
63 (0.111)
75 (0.098)
235 (0.415)
295 (0.387)
268 (0.473)
392 (0.514)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs3817483 Japan SZ
CTR
0.12
0.12
0.88
0.88
12 (0.021)
12 (0.016)
111 (0.196)
158 (0.207)
443 (0.783)
592 (0.777)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs13241278 Japan SZ
CTR
0.69
0.69
0.31
0.31
280 (0.496)
385 (0.507)
223 (0.395)
275 (0.362)
62 (0.110)
99 (0.130)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs1196471 Japan SZ
CTR
0.36
0.36
0.64
0.64
73 (0.129)
97 (0.127)
261 (0.463)
349 (0.458)
230 (0.408)
316 (0.415)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs2693657 Japan SZ
CTR
0.36
0.36
0.64
0.64
71 (0.125)
96 (0.126)
265 (0.468)
350 (0.459)
230 (0.406)
316 (0.415)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Asian
rs1147502 Japan SZ
CTR
0.33
0.35
0.67
0.65
62 (0.110)
95 (0.125)
254 (0.450)
337 (0.442)
249 (0.441)
330 (0.433)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele T-Allele G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
 Asian
rs1147497 Japan SZ
CTR
0.35
0.35
0.65
0.65
68 (0.120)
91 (0.120)
265 (0.469)
357 (0.469)
232 (0.411)
313 (0.411)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs1147492 Japan SZ
CTR
0.43
0.42
0.57
0.58
108 (0.192)
135 (0.177)
272 (0.483)
364 (0.478)
183 (0.325)
263 (0.345)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs1147489 Japan SZ
CTR
0.19
0.18
0.81
0.82
20 (0.035)
19 (0.025)
174 (0.307)
236 (0.310)
372 (0.657)
506 (0.665)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele A-Allele C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
 Asian
rs1206381 Japan SZ
CTR
0.34
0.35
0.66
0.65
64 (0.113)
91 (0.120)
253 (0.447)
348 (0.457)
249 (0.440)
322 (0.423)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs1916885 Japan SZ
CTR
0.34
0.35
0.66
0.65
70 (0.124)
99 (0.130)
240 (0.425)
337 (0.442)
255 (0.451)
326 (0.428)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs3757548 Japan SZ
CTR
0.06
0.06
0.94
0.94
2 (0.004)
3 (0.004)
65 (0.115)
91 (0.120)
499 (0.882)
664 (0.876)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs6974265 Japan SZ
CTR
0.14
0.13
0.86
0.87
6 (0.011)
12 (0.016)
150 (0.265)
171 (0.225)
410 (0.724)
578 (0.760)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs1860721 Japan SZ
CTR
0.11
0.13
0.89
0.87
3 (0.005)
15 (0.020)
118 (0.208)
164 (0.216)
445 (0.786)
582 (0.765)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele C-Allele G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
 Asian
rs4731044 Japan SZ
CTR
0.35
0.36
0.65
0.64
69 (0.123)
112 (0.147)
256 (0.455)
327 (0.429)
238 (0.423)
323 (0.424)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs1196482 Japan SZ
CTR
0.20
0.19
0.80
0.81
17 (0.030)
29 (0.038)
193 (0.341)
237 (0.311)
356 (0.629)
495 (0.650)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Asian
rs10225212 Japan SZ
CTR
0.20
0.18
0.80
0.82
28 (0.049)
27 (0.035)
175 (0.309)
213 (0.280)
363 (0.641)
521 (0.685)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs17144005 Japan SZ
CTR
0.05
0.06
0.95
0.94
2 (0.004)
4 (0.005)
55 (0.097)
91 (0.119)
508 (0.899)
667 (0.875)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele T-Allele G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
 Asian
rs12670616 Japan SZ
CTR
0.04
0.04
0.96
0.96
0 (0.000)
2 (0.003)
42 (0.074)
63 (0.083)
524 (0.926)
697 (0.915)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs1147491 Japan SZ
CTR
0.22
0.23
0.78
0.77
21 (0.037)
48 (0.063)
203 (0.359)
257 (0.337)
341 (0.604)
457 (0.600)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs1918031 Japan SZ
CTR
0.15
0.17
0.85
0.83
12 (0.021)
26 (0.034)
146 (0.258)
203 (0.267)
408 (0.721)
532 (0.699)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs1147488 Japan SZ
CTR
0.12
0.14
0.88
0.86
8 (0.014)
17 (0.022)
122 (0.216)
174 (0.228)
436 (0.770)
571 (0.749)
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