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Polymorphism Details
Study:
Jungerius, 2007
Gene:
PLCB1
(PLC-I; PI-PLC; PLC-154)
Protein:
phosphoinositide-specific phospholipase C beta 1
(PLC-beta-1; phosphoinositidase C; inositoltrisphosphohydrolase; triphosphoinositide phosphodiesterase; monophosphatidylinositol phosphodiesterase; 1-phosphatidyl-D-myo-inositol-4,5-bisphosphate; 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta 1)
Chromosome:
20
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 13 February 2008
Total number of polymorphisms investigated by this study: 23
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs761562
Netherlands
SZ
CTR
0.09
0.13
0.91
0.87
3 (0.010)
9 (0.017)
51 (0.164)
118 (0.227)
257 (0.826)
393 (0.756)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs6140671
Netherlands
SZ
CTR
0.04
0.07
0.96
0.93
1 (0.003)
3 (0.006)
25 (0.080)
68 (0.131)
285 (0.916)
450 (0.864)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs6086590
Netherlands
SZ
CTR
0.32
0.37
0.68
0.63
32 (0.103)
72 (0.139)
135 (0.434)
243 (0.468)
144 (0.463)
204 (0.393)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
C-Allele
A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
Caucasian
rs6086574
Netherlands
SZ
CTR
0.33
0.29
0.67
0.71
34 (0.109)
43 (0.083)
137 (0.441)
213 (0.410)
140 (0.450)
263 (0.507)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
G-Allele
C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
Caucasian
rs2273189
Netherlands
SZ
CTR
0.05
0.06
0.95
0.94
1 (0.003)
2 (0.004)
27 (0.087)
63 (0.121)
283 (0.910)
455 (0.875)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs10485728
Netherlands
SZ
CTR
0.15
0.12
0.85
0.88
7 (0.023)
8 (0.015)
78 (0.252)
111 (0.213)
225 (0.726)
402 (0.772)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs6133610
Netherlands
SZ
CTR
0.10
0.11
0.90
0.89
3 (0.010)
7 (0.013)
53 (0.172)
104 (0.200)
253 (0.819)
410 (0.787)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs1018443
Netherlands
SZ
CTR
0.24
0.22
0.76
0.78
18 (0.058)
25 (0.048)
114 (0.368)
179 (0.345)
178 (0.574)
315 (0.607)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs1033566
Netherlands
SZ
CTR
0.46
0.44
0.54
0.56
66 (0.214)
100 (0.193)
154 (0.498)
256 (0.493)
89 (0.288)
163 (0.314)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Caucasian
rs708933
Netherlands
SZ
CTR
0.47
0.44
0.53
0.56
67 (0.218)
103 (0.198)
153 (0.498)
257 (0.493)
87 (0.283)
161 (0.309)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs6086348
Netherlands
SZ
CTR
0.43
0.45
0.57
0.55
57 (0.183)
105 (0.202)
152 (0.489)
257 (0.495)
102 (0.328)
157 (0.303)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs4816047
Netherlands
SZ
CTR
0.38
0.40
0.62
0.60
46 (0.148)
85 (0.163)
147 (0.473)
251 (0.483)
118 (0.379)
184 (0.354)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs6039049
Netherlands
SZ
CTR
0.19
0.17
0.81
0.83
11 (0.035)
16 (0.031)
94 (0.303)
149 (0.286)
205 (0.661)
356 (0.683)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs6140683
Netherlands
SZ
CTR
0.05
0.04
0.95
0.96
1 (0.003)
1 (0.002)
26 (0.084)
38 (0.073)
284 (0.913)
482 (0.925)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs926505
Netherlands
SZ
CTR
0.03
0.03
0.97
0.97
0 (0.000)
0 (0.000)
21 (0.068)
31 (0.060)
288 (0.932)
488 (0.940)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs2066884
Netherlands
SZ
CTR
0.32
0.33
0.68
0.68
31 (0.100)
55 (0.106)
134 (0.432)
228 (0.438)
145 (0.468)
237 (0.456)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
G-Allele
C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
Caucasian
rs6118293
Netherlands
SZ
CTR
0.08
0.08
0.92
0.92
2 (0.006)
3 (0.006)
46 (0.148)
73 (0.140)
262 (0.845)
444 (0.854)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs2719765
Netherlands
SZ
CTR
0.24
0.23
0.76
0.77
17 (0.055)
27 (0.052)
112 (0.362)
183 (0.353)
180 (0.583)
308 (0.595)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs724110
Netherlands
SZ
CTR
0.16
0.17
0.84
0.83
8 (0.026)
15 (0.029)
85 (0.274)
146 (0.280)
217 (0.700)
360 (0.691)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs4142365
Netherlands
SZ
CTR
0.05
0.05
0.95
0.95
1 (0.003)
2 (0.004)
30 (0.097)
53 (0.102)
279 (0.900)
466 (0.894)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs7269546
Netherlands
SZ
CTR
0.32
0.32
0.68
0.68
32 (0.103)
53 (0.102)
135 (0.435)
226 (0.435)
143 (0.461)
241 (0.463)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs6055990
Netherlands
SZ
CTR
0.08
0.08
0.92
0.93
2 (0.006)
3 (0.006)
43 (0.138)
72 (0.138)
266 (0.855)
445 (0.856)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs6077396
Netherlands
SZ
CTR
0.50
0.50
0.50
0.50
76 (0.245)
128 (0.246)
155 (0.500)
260 (0.500)
79 (0.255)
132 (0.254)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
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