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Printable version

Polymorphism Details

Study:

Christoforou, 2007

Gene:

4p15-16_D2

Protein:

unknown

Chromosome:

4 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 31 October 2007 ; ***This locus was identified via a large-scale fine-mapping (4p15-16) analysis and has not yet been assigned to a specific gene***

Total number of polymorphisms investigated by this study: 11

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Caucasian
rs4697039	UK (Scotland)	SZ CTR	0.42 0.42	0.58 0.58	68 (0.176) 80 (0.174)	188 (0.487) 223 (0.486)	130 (0.337) 156 (0.340)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Caucasian
rs1511436	UK (Scotland)	SZ CTR	0.15 0.14	0.85 0.86	8 (0.021) 9 (0.020)	96 (0.249) 109 (0.238)	282 (0.731) 340 (0.742)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		G-Allele	T-Allele	G/G (frequency)	G/T (frequency)	T/T (frequency)
Caucasian
rs907316	UK (Scotland)	SZ CTR	0.27 0.29	0.73 0.71	28 (0.073) 38 (0.083)	153 (0.396) 188 (0.410)	205 (0.531) 232 (0.507)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Caucasian
rs1021400	UK (Scotland)	SZ CTR	0.13 0.13	0.87 0.87	7 (0.018) 8 (0.017)	88 (0.228) 104 (0.227)	291 (0.754) 347 (0.756)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		G-Allele	C-Allele	G/G (frequency)	G/C (frequency)	C/C (frequency)
Caucasian
rs871409	UK (Scotland)	SZ CTR	0.36 0.35	0.64 0.65	50 (0.130) 57 (0.125)	178 (0.461) 209 (0.457)	158 (0.409) 191 (0.418)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Caucasian
rs4697414	UK (Scotland)	SZ CTR	0.18 0.17	0.82 0.83	13 (0.034) 13 (0.028)	115 (0.298) 129 (0.282)	258 (0.668) 316 (0.690)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		C-Allele	A-Allele	C/C (frequency)	C/A (frequency)	A/A (frequency)
Caucasian
rs10517023	UK (Scotland)	SZ CTR	0.30 0.30	0.70 0.70	34 (0.088) 40 (0.087)	161 (0.418) 191 (0.417)	190 (0.494) 227 (0.496)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Caucasian
rs4697415	UK (Scotland)	SZ CTR	0.36 0.39	0.64 0.61	50 (0.129) 68 (0.148)	178 (0.460) 217 (0.474)	159 (0.411) 173 (0.378)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Caucasian
rs1491384	UK (Scotland)	SZ CTR	0.29 0.32	0.71 0.68	33 (0.085) 48 (0.105)	159 (0.412) 201 (0.439)	194 (0.503) 209 (0.456)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Caucasian
rs1491380	UK (Scotland)	SZ CTR	0.37 0.36	0.63 0.64	54 (0.140) 58 (0.127)	181 (0.469) 210 (0.460)	151 (0.391) 189 (0.414)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Caucasian
rs1159937	UK (Scotland)	SZ CTR	0.25 0.22	0.75 0.78	24 (0.062) 23 (0.050)	144 (0.373) 160 (0.349)	218 (0.565) 275 (0.600)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.


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