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Printable version
Polymorphism Details
Study:
Djurovic, 2009
Gene:
MCTP2
(FLJ11175; FLJ33303; MGC111402)
Protein:
multiple C2 domains, transmembrane 2
(multiple C2-domains with two transmembrane regions 2)
Chromosome:
15
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 20 April 2009
Total number of polymorphisms investigated by this study: 34
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs294544
Norway
SZ
CTR
0.46
0.45
0.54
0.55
34 (0.209)
36 (0.203)
81 (0.497)
87 (0.492)
48 (0.294)
54 (0.305)
rs294544
Denmark
SZ
CTR
0.44
0.43
0.56
0.57
81 (0.193)
186 (0.185)
207 (0.493)
493 (0.490)
132 (0.314)
327 (0.325)
rs294544
Sweden
SZ
CTR
0.43
0.46
0.57
0.54
48 (0.187)
62 (0.212)
126 (0.490)
146 (0.498)
83 (0.323)
85 (0.290)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs294543
Sweden
SZ
CTR
0.46
0.49
0.54
0.51
54 (0.210)
70 (0.239)
128 (0.498)
147 (0.502)
75 (0.292)
76 (0.259)
rs294543
Denmark
SZ
CTR
0.49
0.47
0.51
0.53
101 (0.240)
222 (0.221)
210 (0.500)
501 (0.498)
109 (0.260)
283 (0.281)
rs294543
Norway
SZ
CTR
0.50
0.49
0.50
0.51
41 (0.252)
42 (0.237)
81 (0.497)
89 (0.503)
41 (0.252)
46 (0.260)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs12899314
Norway
SZ
CTR
0.25
0.20
0.75
0.80
10 (0.061)
7 (0.040)
61 (0.374)
57 (0.322)
92 (0.564)
113 (0.638)
rs12899314
Denmark
SZ
CTR
0.24
0.23
0.76
0.77
24 (0.057)
53 (0.053)
153 (0.364)
356 (0.354)
243 (0.579)
597 (0.593)
rs12899314
Sweden
SZ
CTR
0.23
0.22
0.77
0.78
14 (0.054)
14 (0.048)
91 (0.354)
101 (0.345)
152 (0.591)
178 (0.608)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
T-Allele
A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
Caucasian
rs294542
Sweden
SZ
CTR
0.34
0.32
0.66
0.68
30 (0.117)
30 (0.102)
115 (0.447)
128 (0.437)
112 (0.436)
135 (0.461)
rs294542
Denmark
SZ
CTR
0.32
0.34
0.68
0.66
43 (0.102)
116 (0.115)
183 (0.436)
452 (0.449)
194 (0.462)
438 (0.435)
rs294542
Norway
SZ
CTR
0.31
0.33
0.69
0.67
16 (0.098)
19 (0.107)
70 (0.429)
78 (0.441)
77 (0.472)
80 (0.452)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs294560
Norway
SZ
CTR
0.18
0.20
0.82
0.80
5 (0.031)
7 (0.040)
48 (0.294)
57 (0.322)
110 (0.675)
113 (0.638)
rs294560
Denmark
SZ
CTR
0.20
0.21
0.80
0.79
17 (0.040)
44 (0.044)
134 (0.319)
334 (0.332)
269 (0.640)
628 (0.624)
rs294560
Sweden
SZ
CTR
0.18
0.18
0.82
0.82
8 (0.031)
9 (0.031)
76 (0.296)
86 (0.294)
173 (0.673)
198 (0.676)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs294558
Sweden
SZ
CTR
0.34
0.35
0.66
0.65
30 (0.117)
36 (0.123)
115 (0.447)
133 (0.454)
112 (0.436)
124 (0.423)
rs294558
Denmark
SZ
CTR
0.38
0.35
0.62
0.65
61 (0.145)
123 (0.122)
198 (0.471)
458 (0.455)
161 (0.383)
425 (0.422)
rs294558
Norway
SZ
CTR
0.38
0.35
0.62
0.65
24 (0.147)
22 (0.124)
76 (0.466)
80 (0.452)
63 (0.387)
75 (0.424)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
G-Allele
C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
Caucasian
rs294557
Norway
SZ
CTR
0.40
0.37
0.60
0.63
26 (0.160)
24 (0.136)
78 (0.479)
83 (0.469)
59 (0.362)
70 (0.395)
rs294557
Denmark
SZ
CTR
0.43
0.38
0.57
0.62
78 (0.186)
145 (0.144)
206 (0.490)
474 (0.471)
136 (0.324)
387 (0.385)
rs294557
Sweden
SZ
CTR
0.40
0.38
0.60
0.62
41 (0.160)
42 (0.143)
123 (0.479)
138 (0.471)
93 (0.362)
113 (0.386)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
T-Allele
G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
Caucasian
rs12101974
Sweden
SZ
CTR
0.29
0.27
0.71
0.73
22 (0.086)
21 (0.072)
106 (0.412)
116 (0.396)
129 (0.502)
156 (0.532)
rs12101974
Denmark
SZ
CTR
0.28
0.25
0.72
0.75
33 (0.079)
63 (0.063)
169 (0.402)
377 (0.375)
218 (0.519)
566 (0.563)
rs12101974
Norway
SZ
CTR
0.29
0.25
0.71
0.75
14 (0.086)
11 (0.062)
67 (0.411)
66 (0.373)
82 (0.503)
100 (0.565)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
G-Allele
T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
Caucasian
rs7178612
Norway
SZ
CTR
0.21
0.17
0.79
0.83
7 (0.043)
5 (0.028)
54 (0.331)
50 (0.282)
102 (0.626)
122 (0.689)
rs7178612
Denmark
SZ
CTR
0.20
0.18
0.80
0.82
17 (0.040)
33 (0.033)
134 (0.319)
297 (0.295)
269 (0.640)
676 (0.672)
rs7178612
Sweden
SZ
CTR
0.19
0.18
0.81
0.82
9 (0.035)
9 (0.031)
79 (0.307)
86 (0.294)
169 (0.658)
198 (0.676)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs1433944
Sweden
SZ
CTR
0.32
0.35
0.68
0.65
26 (0.101)
36 (0.123)
112 (0.436)
133 (0.454)
119 (0.463)
124 (0.423)
rs1433944
Denmark
SZ
CTR
0.32
0.33
0.68
0.67
43 (0.102)
110 (0.109)
183 (0.436)
445 (0.442)
194 (0.462)
451 (0.448)
rs1433944
Norway
SZ
CTR
0.34
0.29
0.66
0.71
19 (0.117)
15 (0.085)
73 (0.448)
73 (0.412)
71 (0.436)
89 (0.503)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
G-Allele
T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
Caucasian
rs11852581
Norway
SZ
CTR
0.25
0.22
0.75
0.78
10 (0.061)
9 (0.051)
61 (0.374)
60 (0.339)
92 (0.564)
108 (0.610)
rs11852581
Denmark
SZ
CTR
0.24
0.23
0.76
0.77
24 (0.057)
53 (0.053)
153 (0.364)
356 (0.354)
243 (0.579)
597 (0.593)
rs11852581
Sweden
SZ
CTR
0.25
0.23
0.75
0.77
16 (0.062)
15 (0.051)
96 (0.374)
104 (0.355)
145 (0.564)
174 (0.594)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
A-Allele
T/T
(frequency)
T/A
(frequency)
A/A
(frequency)
Caucasian
rs7176435
Sweden
SZ
CTR
0.48
0.47
0.52
0.53
59 (0.230)
65 (0.222)
129 (0.502)
146 (0.498)
69 (0.268)
82 (0.280)
rs7176435
Denmark
SZ
CTR
0.49
0.44
0.51
0.56
101 (0.240)
195 (0.194)
210 (0.500)
496 (0.493)
109 (0.260)
315 (0.313)
rs7176435
Norway
SZ
CTR
0.47
0.45
0.53
0.55
36 (0.221)
36 (0.203)
81 (0.497)
87 (0.492)
46 (0.282)
54 (0.305)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs10152899
Norway
SZ
CTR
0.19
0.16
0.81
0.84
6 (0.037)
5 (0.028)
50 (0.307)
48 (0.271)
107 (0.656)
124 (0.701)
rs10152899
Denmark
SZ
CTR
0.20
0.18
0.80
0.82
17 (0.040)
33 (0.033)
134 (0.319)
297 (0.295)
269 (0.640)
676 (0.672)
rs10152899
Sweden
SZ
CTR
0.17
0.18
0.83
0.82
7 (0.027)
9 (0.031)
73 (0.284)
86 (0.294)
177 (0.689)
198 (0.676)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs4984380
Sweden
SZ
CTR
0.44
0.44
0.56
0.56
50 (0.195)
57 (0.195)
126 (0.490)
144 (0.491)
81 (0.315)
92 (0.314)
rs4984380
Denmark
SZ
CTR
0.45
0.42
0.55
0.58
85 (0.202)
177 (0.176)
208 (0.495)
491 (0.488)
127 (0.302)
338 (0.336)
rs4984380
Norway
SZ
CTR
0.44
0.41
0.56
0.59
32 (0.196)
30 (0.169)
80 (0.491)
85 (0.480)
51 (0.313)
62 (0.350)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
T-Allele
G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
Caucasian
rs12910914
Norway
SZ
CTR
0.26
0.24
0.74
0.76
11 (0.067)
10 (0.056)
63 (0.387)
65 (0.367)
89 (0.546)
102 (0.576)
rs12910914
Denmark
SZ
CTR
0.27
0.26
0.73
0.74
31 (0.074)
68 (0.068)
166 (0.395)
387 (0.385)
223 (0.531)
551 (0.548)
rs12910914
Sweden
SZ
CTR
0.28
0.28
0.72
0.72
20 (0.078)
23 (0.078)
104 (0.405)
118 (0.403)
133 (0.518)
152 (0.519)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs1529776
Sweden
SZ
CTR
0.17
0.17
0.83
0.83
7 (0.027)
8 (0.027)
73 (0.284)
83 (0.283)
177 (0.689)
202 (0.689)
rs1529776
Denmark
SZ
CTR
0.18
0.18
0.82
0.82
14 (0.033)
33 (0.033)
124 (0.295)
297 (0.295)
282 (0.671)
676 (0.672)
rs1529776
Norway
SZ
CTR
0.16
0.15
0.84
0.85
4 (0.025)
4 (0.023)
44 (0.270)
45 (0.254)
115 (0.706)
128 (0.723)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs11630899
Norway
SZ
CTR
0.17
0.16
0.83
0.84
5 (0.031)
5 (0.028)
46 (0.282)
48 (0.271)
112 (0.687)
124 (0.701)
rs11630899
Denmark
SZ
CTR
0.19
0.18
0.81
0.82
15 (0.036)
33 (0.033)
129 (0.307)
297 (0.295)
276 (0.657)
676 (0.672)
rs11630899
Sweden
SZ
CTR
0.17
0.17
0.83
0.83
7 (0.027)
8 (0.027)
73 (0.284)
83 (0.283)
177 (0.689)
202 (0.689)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs10520749
Sweden
SZ
CTR
0.36
0.32
0.64
0.68
33 (0.128)
30 (0.102)
119 (0.463)
128 (0.437)
105 (0.409)
135 (0.461)
rs10520749
Denmark
SZ
CTR
0.36
0.34
0.64
0.66
54 (0.129)
116 (0.115)
194 (0.462)
452 (0.449)
172 (0.410)
438 (0.435)
rs10520749
Norway
SZ
CTR
0.29
0.31
0.71
0.69
14 (0.086)
17 (0.096)
67 (0.411)
76 (0.429)
82 (0.503)
84 (0.475)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs12440504
Norway
SZ
CTR
0.32
0.35
0.68
0.65
17 (0.104)
22 (0.124)
71 (0.436)
80 (0.452)
75 (0.460)
75 (0.424)
rs12440504
Denmark
SZ
CTR
0.32
0.35
0.68
0.65
43 (0.102)
123 (0.122)
183 (0.436)
458 (0.455)
194 (0.462)
425 (0.422)
rs12440504
Sweden
SZ
CTR
0.36
0.33
0.64
0.67
33 (0.128)
32 (0.109)
119 (0.463)
130 (0.444)
105 (0.409)
131 (0.447)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs17630733
Sweden
SZ
CTR
0.13
0.15
0.87
0.85
4 (0.016)
7 (0.024)
58 (0.226)
75 (0.256)
195 (0.759)
211 (0.720)
rs17630733
Denmark
SZ
CTR
0.15
0.13
0.85
0.87
9 (0.021)
17 (0.017)
107 (0.255)
228 (0.227)
304 (0.724)
761 (0.756)
rs17630733
Norway
SZ
CTR
0.13
0.11
0.87
0.89
3 (0.018)
2 (0.011)
37 (0.227)
35 (0.198)
123 (0.755)
140 (0.791)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
T-Allele
A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
Caucasian
rs7163806
Norway
SZ
CTR
0.34
0.36
0.66
0.64
19 (0.117)
23 (0.130)
73 (0.448)
82 (0.463)
71 (0.436)
72 (0.407)
rs7163806
Denmark
SZ
CTR
0.35
0.34
0.65
0.66
51 (0.121)
116 (0.115)
191 (0.455)
452 (0.449)
178 (0.424)
438 (0.435)
rs7163806
Sweden
SZ
CTR
0.32
0.31
0.68
0.69
26 (0.101)
28 (0.096)
112 (0.436)
125 (0.427)
119 (0.463)
140 (0.478)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs8025603
Sweden
SZ
CTR
0.26
0.31
0.74
0.69
17 (0.066)
28 (0.096)
99 (0.385)
125 (0.427)
141 (0.549)
140 (0.478)
rs8025603
Denmark
SZ
CTR
0.29
0.26
0.71
0.74
35 (0.083)
68 (0.068)
173 (0.412)
387 (0.385)
212 (0.505)
551 (0.548)
rs8025603
Norway
SZ
CTR
0.28
0.21
0.72
0.79
13 (0.080)
8 (0.045)
66 (0.405)
59 (0.333)
84 (0.515)
110 (0.621)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs1991897
Norway
SZ
CTR
0.25
0.26
0.75
0.74
10 (0.061)
12 (0.068)
61 (0.374)
68 (0.384)
92 (0.564)
97 (0.548)
rs1991897
Denmark
SZ
CTR
0.31
0.25
0.69
0.75
40 (0.095)
63 (0.063)
180 (0.429)
377 (0.375)
200 (0.476)
566 (0.563)
rs1991897
Sweden
SZ
CTR
0.28
0.28
0.72
0.72
20 (0.078)
23 (0.078)
104 (0.405)
118 (0.403)
133 (0.518)
152 (0.519)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs11633291
Sweden
SZ
CTR
0.49
0.48
0.51
0.52
62 (0.241)
68 (0.232)
128 (0.498)
146 (0.498)
67 (0.261)
79 (0.270)
rs11633291
Denmark
SZ
CTR
0.47
0.46
0.53
0.54
93 (0.221)
213 (0.212)
209 (0.498)
500 (0.497)
118 (0.281)
293 (0.291)
rs11633291
Norway
SZ
CTR
0.46
0.46
0.54
0.54
34 (0.209)
37 (0.209)
81 (0.497)
88 (0.497)
48 (0.294)
52 (0.294)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs4984390
Norway
SZ
CTR
0.33
0.34
0.67
0.66
18 (0.110)
20 (0.113)
72 (0.442)
80 (0.452)
73 (0.448)
77 (0.435)
rs4984390
Denmark
SZ
CTR
0.36
0.31
0.64
0.69
54 (0.129)
97 (0.096)
194 (0.462)
430 (0.427)
172 (0.410)
479 (0.476)
rs4984390
Sweden
SZ
CTR
0.35
0.32
0.65
0.68
31 (0.121)
30 (0.102)
117 (0.455)
128 (0.437)
109 (0.424)
135 (0.461)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs2117214
Sweden
SZ
CTR
0.39
0.40
0.61
0.60
39 (0.152)
47 (0.160)
122 (0.475)
141 (0.481)
96 (0.374)
105 (0.358)
rs2117214
Denmark
SZ
CTR
0.37
0.38
0.63
0.62
57 (0.136)
145 (0.144)
196 (0.467)
474 (0.471)
167 (0.398)
387 (0.385)
rs2117214
Norway
SZ
CTR
0.40
0.39
0.60
0.61
26 (0.160)
27 (0.153)
78 (0.479)
84 (0.475)
59 (0.362)
66 (0.373)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs4984391
Norway
SZ
CTR
0.34
0.34
0.66
0.66
19 (0.117)
20 (0.113)
73 (0.448)
80 (0.452)
71 (0.436)
77 (0.435)
rs4984391
Denmark
SZ
CTR
0.31
0.32
0.69
0.68
40 (0.095)
103 (0.102)
180 (0.429)
438 (0.435)
200 (0.476)
465 (0.462)
rs4984391
Sweden
SZ
CTR
0.34
0.36
0.66
0.64
30 (0.117)
38 (0.130)
115 (0.447)
135 (0.461)
112 (0.436)
120 (0.410)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs7180682
Sweden
SZ
CTR
0.38
0.39
0.62
0.61
37 (0.144)
45 (0.154)
121 (0.471)
139 (0.474)
99 (0.385)
109 (0.372)
rs7180682
Denmark
SZ
CTR
0.43
0.41
0.57
0.59
78 (0.186)
169 (0.168)
206 (0.490)
487 (0.484)
136 (0.324)
350 (0.348)
rs7180682
Norway
SZ
CTR
0.41
0.43
0.59
0.57
27 (0.166)
33 (0.186)
79 (0.485)
87 (0.492)
57 (0.350)
57 (0.322)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs3784647
Norway
SZ
CTR
0.23
0.20
0.77
0.80
9 (0.055)
7 (0.040)
58 (0.352)
57 (0.322)
98 (0.594)
113 (0.638)
rs3784647
Denmark
SZ
CTR
0.23
0.20
0.77
0.80
22 (0.052)
40 (0.040)
149 (0.355)
322 (0.320)
249 (0.593)
644 (0.640)
rs3784647
Sweden
SZ
CTR
0.20
0.21
0.80
0.79
10 (0.039)
13 (0.044)
82 (0.319)
97 (0.331)
165 (0.642)
183 (0.625)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs8027043
Sweden
SZ
CTR
0.18
0.20
0.82
0.80
8 (0.031)
12 (0.041)
76 (0.296)
94 (0.321)
173 (0.673)
187 (0.638)
rs8027043
Denmark
SZ
CTR
0.15
0.19
0.85
0.81
9 (0.021)
36 (0.036)
107 (0.255)
310 (0.308)
304 (0.724)
660 (0.656)
rs8027043
Norway
SZ
CTR
0.17
0.18
0.83
0.82
5 (0.031)
6 (0.034)
46 (0.282)
52 (0.294)
112 (0.687)
119 (0.672)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs17631184
Norway
SZ
CTR
0.18
0.16
0.82
0.84
5 (0.031)
5 (0.028)
48 (0.294)
48 (0.271)
110 (0.675)
124 (0.701)
rs17631184
Denmark
SZ
CTR
0.16
0.17
0.84
0.83
11 (0.026)
29 (0.029)
113 (0.269)
284 (0.282)
296 (0.705)
693 (0.689)
rs17631184
Sweden
SZ
CTR
0.19
0.16
0.81
0.84
9 (0.035)
8 (0.027)
79 (0.307)
79 (0.270)
169 (0.658)
206 (0.703)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
T-Allele
A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
Caucasian
rs2552175
Sweden
SZ
CTR
0.23
0.28
0.77
0.72
14 (0.054)
23 (0.078)
91 (0.354)
118 (0.403)
152 (0.591)
152 (0.519)
rs2552175
Denmark
SZ
CTR
0.22
0.22
0.78
0.78
20 (0.048)
49 (0.049)
144 (0.343)
345 (0.343)
256 (0.610)
612 (0.608)
rs2552175
Norway
SZ
CTR
0.20
0.21
0.80
0.79
7 (0.043)
8 (0.045)
52 (0.319)
59 (0.333)
104 (0.638)
110 (0.621)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs293577
Norway
SZ
CTR
0.25
0.25
0.75
0.75
10 (0.061)
11 (0.062)
61 (0.374)
66 (0.373)
92 (0.564)
100 (0.565)
rs293577
Denmark
SZ
CTR
0.24
0.25
0.76
0.75
24 (0.057)
63 (0.063)
153 (0.364)
377 (0.375)
243 (0.579)
566 (0.563)
rs293577
Sweden
SZ
CTR
0.27
0.27
0.73
0.73
19 (0.074)
21 (0.072)
101 (0.393)
116 (0.396)
137 (0.533)
156 (0.532)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Caucasian
rs11074279
Sweden
SZ
CTR
0.29
0.32
0.71
0.68
22 (0.086)
30 (0.102)
106 (0.412)
128 (0.437)
129 (0.502)
135 (0.461)
rs11074279
Denmark
SZ
CTR
0.32
0.31
0.68
0.69
43 (0.102)
97 (0.096)
183 (0.436)
430 (0.427)
194 (0.462)
479 (0.476)
rs11074279
Norway
SZ
CTR
0.32
0.36
0.68
0.64
17 (0.104)
23 (0.130)
71 (0.436)
82 (0.463)
75 (0.460)
72 (0.407)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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