SZGene

Polymorphism Details

Study:

Watanabe, 2009

Gene:

PADI2 (RP1-37C10.6; KIAA0994; PAD-H19; PAD2; PDI2)

Protein:

peptidyl arginine deiminase, type II (peptidlyarginine deiminase type II; protein arginine deiminase; protein-arginine deiminase type-2)

Chromosome:

1 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 30 December 2009

Total number of polymorphisms investigated by this study: 8

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Asian
rs2235926	Japan (I)	SZ CTR	0.44 0.41	0.56 0.59	102 (0.191) 92 (0.165)	269 (0.505) 271 (0.485)	162 (0.304) 196 (0.351)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Asian
rs2076595	Japan (I)	SZ CTR	0.42 0.38	0.58 0.62	91 (0.173) 86 (0.155)	265 (0.504) 256 (0.460)	170 (0.323) 214 (0.385)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Asian
rs3818032	Japan (I)	SZ CTR	0.42 0.38	0.58 0.62	89 (0.169) 84 (0.151)	266 (0.504) 258 (0.463)	173 (0.328) 215 (0.386)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	G-Allele	A/A (frequency)	A/G (frequency)	G/G (frequency)
Asian
rs2057096	Japan (I)	SZ CTR	0.43 0.39	0.57 0.61	93 (0.175) 93 (0.168)	267 (0.504) 250 (0.452)	170 (0.321) 210 (0.380)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	C-Allele	A/A (frequency)	A/C (frequency)	C/C (frequency)
Asian
rs2076615	Japan (I)	SZ CTR	0.49 0.41	0.51 0.59	121 (0.227) 101 (0.181)	282 (0.529) 256 (0.459)	130 (0.244) 201 (0.360)
rs2076615	Japan (II)	SZ CTR	0.47 0.47	0.53 0.53	470 (0.227) 464 (0.212)	1014 (0.490) 1148 (0.523)	585 (0.283) 581 (0.265)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs2076614	Japan (I)	SZ CTR	0.47 0.45	0.53 0.55	115 (0.216) 120 (0.216)	276 (0.518) 265 (0.477)	142 (0.266) 171 (0.308)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	C-Allele	G/G (frequency)	G/C (frequency)	C/C (frequency)
Asian
rs10788656	Japan (I)	SZ CTR	0.13 0.12	0.87 0.88	14 (0.026) 13 (0.023)	112 (0.211) 108 (0.193)	406 (0.763) 438 (0.784)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	C-Allele	A/A (frequency)	A/C (frequency)	C/C (frequency)
Asian
rs2143810	Japan (I)	SZ CTR	0.36 0.34	0.64 0.66	69 (0.128) 69 (0.124)	248 (0.461) 237 (0.425)	221 (0.411) 252 (0.452)


SZGene Recent Updates
SZGene Stats Studies: 1727 Genes: 1008 Polymorphisms: 8788 Meta-analyses: 287





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