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Polymorphism Details
Study:
Burdick, 2010
Gene:
MET
(AUTS9; HGFR; RCCP2; c-Met)
Protein:
met proto-oncogene (hepatocyte growth factor receptor)
(HGF receptor; SF receptor; met proto-oncogene; met proto-oncogene tyrosine kinase; oncogene MET; scatter factor receptor)
Chromosome:
7
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 24 January 2010
Total number of polymorphisms investigated by this study: 10
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
C-Allele
A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
Caucasian
rs6944417
USA (I)
SZ
CTR
0.12
0.13
0.88
0.87
3 (0.017)
2 (0.015)
37 (0.214)
31 (0.226)
133 (0.769)
104 (0.759)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
T-Allele
G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
Caucasian
rs41741
USA (I)
SZ
CTR
0.39
0.31
0.61
0.69
26 (0.150)
13 (0.095)
83 (0.480)
59 (0.431)
64 (0.370)
65 (0.474)
rs41741
USA (II)
SZ
CTR
0.34
0.28
0.66
0.72
12 (0.112)
9 (0.080)
48 (0.449)
45 (0.402)
47 (0.439)
58 (0.518)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs41735
USA (I)
SZ
CTR
0.38
0.50
0.62
0.50
25 (0.145)
34 (0.248)
81 (0.468)
68 (0.496)
67 (0.387)
35 (0.255)
rs41735
USA (II)
SZ
CTR
0.57
0.47
0.43
0.53
34 (0.318)
25 (0.223)
53 (0.495)
56 (0.500)
20 (0.187)
31 (0.277)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs38857
USA (I)
SZ
CTR
0.34
0.28
0.66
0.72
20 (0.116)
11 (0.080)
77 (0.445)
56 (0.409)
76 (0.439)
70 (0.511)
rs38857
USA (II)
SZ
CTR
0.27
0.25
0.73
0.75
8 (0.075)
7 (0.063)
42 (0.393)
42 (0.375)
57 (0.533)
63 (0.563)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
A-Allele
T/T
(frequency)
T/A
(frequency)
A/A
(frequency)
Caucasian
rs38852
USA (I)
SZ
CTR
0.39
0.50
0.61
0.50
27 (0.156)
34 (0.248)
82 (0.474)
68 (0.496)
64 (0.370)
35 (0.255)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs38841
USA (I)
SZ
CTR
0.32
0.38
0.68
0.62
18 (0.104)
20 (0.146)
75 (0.434)
65 (0.474)
80 (0.462)
52 (0.380)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs2299433
USA (I)
SZ
CTR
0.27
0.26
0.73
0.74
13 (0.075)
9 (0.066)
69 (0.399)
53 (0.387)
91 (0.526)
75 (0.547)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs2283053
USA (I)
SZ
CTR
0.21
0.16
0.79
0.84
8 (0.046)
4 (0.029)
57 (0.329)
37 (0.270)
108 (0.624)
96 (0.701)
rs2283053
USA (II)
SZ
CTR
0.23
0.17
0.77
0.83
6 (0.056)
3 (0.027)
38 (0.355)
32 (0.286)
63 (0.589)
77 (0.688)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs2237717
USA (I)
SZ
CTR
0.37
0.50
0.63
0.50
24 (0.139)
34 (0.248)
81 (0.468)
68 (0.496)
68 (0.393)
35 (0.255)
rs2237717
USA (II)
SZ
CTR
0.57
0.47
0.43
0.53
34 (0.318)
25 (0.223)
53 (0.495)
55 (0.491)
20 (0.187)
32 (0.286)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs10215153
USA (I)
SZ
CTR
0.35
0.30
0.65
0.70
21 (0.121)
12 (0.088)
79 (0.457)
57 (0.416)
73 (0.422)
68 (0.496)
rs10215153
USA (II)
SZ
CTR
0.28
0.25
0.72
0.75
8 (0.075)
7 (0.063)
43 (0.402)
42 (0.375)
56 (0.523)
63 (0.563)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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SZGene Stats
Studies: 1727
Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
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