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Gene: |
NALCN
(CanIon; FLJ23913; FLJ44659; FLJ44764; MGC74524; VGCNL1; bA430M15.1)
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Protein: |
sodium leak channel, non-selective
(four repeat voltage-gated ion channel; sodium leak channel non-selective protein; voltage gated channel like 1; voltage gated channel-like protein 1)
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Status: |
Updated 7 October 2010
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Total number of polymorphisms investigated by this study: 21 |
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs9554752
|
Canada, USA |
SZ CTR |
0.35 0.37 |
0.65 0.63 |
58 (0.125) 30 (0.136) |
212 (0.457) 102 (0.464) |
194 (0.418) 88 (0.400) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
A-Allele |
G-Allele |
A/A (frequency) |
A/G (frequency) |
G/G (frequency) |
Caucasian |
rs686141
|
Canada, USA |
SZ CTR |
0.25 0.28 |
0.75 0.72 |
29 (0.063) 17 (0.077) |
174 (0.375) 88 (0.398) |
261 (0.563) 116 (0.525) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
A-Allele |
G-Allele |
A/A (frequency) |
A/G (frequency) |
G/G (frequency) |
Caucasian |
rs12867417
|
Canada, USA |
SZ CTR |
0.20 0.21 |
0.80 0.79 |
18 (0.039) 9 (0.041) |
147 (0.317) 72 (0.329) |
299 (0.644) 138 (0.630) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
C-Allele |
T-Allele |
C/C (frequency) |
C/T (frequency) |
T/T (frequency) |
Caucasian |
rs658213
|
Canada, USA |
SZ CTR |
0.23 0.27 |
0.77 0.73 |
24 (0.052) 16 (0.073) |
163 (0.354) 87 (0.397) |
274 (0.594) 116 (0.530) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs614728
|
Canada, USA |
SZ CTR |
0.29 0.32 |
0.71 0.68 |
40 (0.086) 23 (0.105) |
193 (0.416) 96 (0.436) |
231 (0.498) 101 (0.459) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
A-Allele |
G-Allele |
A/A (frequency) |
A/G (frequency) |
G/G (frequency) |
Caucasian |
rs9513851
|
Canada, USA |
SZ CTR |
0.06 0.06 |
0.94 0.94 |
2 (0.004) 1 (0.005) |
53 (0.114) 24 (0.109) |
409 (0.881) 195 (0.886) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
C-Allele |
T-Allele |
C/C (frequency) |
C/T (frequency) |
T/T (frequency) |
Caucasian |
rs9518307
|
Canada, USA |
SZ CTR |
0.06 0.07 |
0.94 0.93 |
2 (0.004) 1 (0.005) |
54 (0.116) 27 (0.123) |
408 (0.879) 192 (0.873) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
A-Allele |
T-Allele |
A/A (frequency) |
A/T (frequency) |
T/T (frequency) |
Caucasian |
rs12584031
|
Canada, USA |
SZ CTR |
0.17 0.18 |
0.83 0.82 |
14 (0.030) 7 (0.032) |
134 (0.289) 65 (0.297) |
315 (0.680) 147 (0.671) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
G-Allele |
T/T (frequency) |
T/G (frequency) |
G/G (frequency) |
Caucasian |
rs1452112
|
Canada, USA |
SZ CTR |
0.26 0.23 |
0.74 0.77 |
32 (0.069) 12 (0.055) |
180 (0.389) 78 (0.355) |
251 (0.542) 130 (0.591) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
G-Allele |
T/T (frequency) |
T/G (frequency) |
G/G (frequency) |
Caucasian |
rs7317836
|
Canada, USA |
SZ CTR |
0.30 0.30 |
0.70 0.70 |
41 (0.088) 20 (0.090) |
194 (0.417) 92 (0.416) |
230 (0.495) 109 (0.493) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
G-Allele |
A-Allele |
G/G (frequency) |
G/A (frequency) |
A/A (frequency) |
Caucasian |
rs9518320
|
Canada, USA |
SZ CTR |
0.28 0.34 |
0.72 0.66 |
37 (0.080) 26 (0.118) |
188 (0.404) 99 (0.448) |
240 (0.516) 96 (0.434) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
G-Allele |
T/T (frequency) |
T/G (frequency) |
G/G (frequency) |
Caucasian |
rs9518331
|
Canada, USA |
SZ CTR |
0.29 0.34 |
0.71 0.66 |
38 (0.082) 26 (0.118) |
190 (0.410) 99 (0.448) |
235 (0.508) 96 (0.434) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
G-Allele |
T/T (frequency) |
T/G (frequency) |
G/G (frequency) |
Caucasian |
rs9518349
|
Canada, USA |
SZ CTR |
0.41 0.40 |
0.59 0.60 |
78 (0.168) 36 (0.164) |
225 (0.485) 106 (0.482) |
161 (0.347) 78 (0.355) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs10508059
|
Canada, USA |
SZ CTR |
0.17 0.19 |
0.83 0.81 |
14 (0.030) 8 (0.036) |
134 (0.289) 67 (0.305) |
315 (0.680) 145 (0.659) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs7328287
|
Canada, USA |
SZ CTR |
0.41 0.41 |
0.59 0.59 |
76 (0.165) 37 (0.168) |
223 (0.483) 107 (0.486) |
163 (0.353) 76 (0.345) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs496238
|
Canada, USA |
SZ CTR |
0.34 0.35 |
0.66 0.65 |
55 (0.119) 27 (0.123) |
209 (0.450) 100 (0.455) |
200 (0.431) 93 (0.423) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
A-Allele |
G-Allele |
A/A (frequency) |
A/G (frequency) |
G/G (frequency) |
Caucasian |
rs9554772
|
Canada, USA |
SZ CTR |
0.43 0.43 |
0.57 0.57 |
85 (0.184) 41 (0.186) |
226 (0.489) 108 (0.491) |
151 (0.327) 71 (0.323) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group) |
|
Genotypes* |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs1748680
|
Canada, USA |
SZ CTR |
0.22 0.21 |
0.78 0.79 |
22 (0.047) 10 (0.045) |
158 (0.341) 74 (0.336) |
284 (0.612) 136 (0.618) |
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs9554752
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
A-Allele |
G-Allele |
A/A (frequency) |
A/G (frequency) |
G/G (frequency) |
Caucasian |
rs686141
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
A-Allele |
G-Allele |
A/A (frequency) |
A/G (frequency) |
G/G (frequency) |
Caucasian |
rs12867417
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
C-Allele |
T-Allele |
C/C (frequency) |
C/T (frequency) |
T/T (frequency) |
Caucasian |
rs658213
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs614728
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
A-Allele |
G-Allele |
A/A (frequency) |
A/G (frequency) |
G/G (frequency) |
Caucasian |
rs9513851
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
C-Allele |
T-Allele |
C/C (frequency) |
C/T (frequency) |
T/T (frequency) |
Caucasian |
rs9518307
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
A-Allele |
T-Allele |
A/A (frequency) |
A/T (frequency) |
T/T (frequency) |
Caucasian |
rs12584031
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
G-Allele |
T/T (frequency) |
T/G (frequency) |
G/G (frequency) |
Caucasian |
rs1452112
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
G-Allele |
T/T (frequency) |
T/G (frequency) |
G/G (frequency) |
Caucasian |
rs7317836
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
G-Allele |
A-Allele |
G/G (frequency) |
G/A (frequency) |
A/A (frequency) |
Caucasian |
rs9518320
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
G-Allele |
T/T (frequency) |
T/G (frequency) |
G/G (frequency) |
Caucasian |
rs9518331
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
G-Allele |
T/T (frequency) |
T/G (frequency) |
G/G (frequency) |
Caucasian |
rs9518349
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs10508059
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs7328287
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs496238
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
A-Allele |
G-Allele |
A/A (frequency) |
A/G (frequency) |
G/G (frequency) |
Caucasian |
rs9554772
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs1748680
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
A-Allele |
G-Allele |
A/A (frequency) |
A/G (frequency) |
G/G (frequency) |
Caucasian |
rs17677552
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
C-Allele |
T-Allele |
C/C (frequency) |
C/T (frequency) |
T/T (frequency) |
Caucasian |
rs2584531
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
Family-Based Studies (by ethnic group) |
|
Genotypes |
Polymorphism ID# (Link to NCBI) |
Population |
|
T-Allele |
C-Allele |
T/T (frequency) |
T/C (frequency) |
C/C (frequency) |
Caucasian |
rs3916906
|
Canada, USA |
SZ CTR |
- - |
- - |
0 (-) 0 (-) |
0 (-) 0 (-) |
0 (-) 0 (-) |
(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
|
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|
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