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Polymorphism Details     
Back Search Methods Disclaimer Credits
 Study: Deng, 2004
 Gene: SLC1A2  (EAAT2; GLT-1)  Entrez Gene    View on ALSGene   View on MSGene
 Protein: excitatory amino acid transporter 2  (solute carrier family 1, member 2; glutamate/aspartate transporter II; excitotoxic amino acid transporter 2; glial high affinity glutamate transporter; sodium-dependent glutamate/aspartate transporter 2)  ProteinLink
 Chromosome: 11   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 30 December 2009
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 11

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs1923295 Japan (I) SZ
CTR
0.44
0.39
0.57
0.61
20 (0.200)
16 (0.160)
47 (0.470)
46 (0.460)
33 (0.330)
38 (0.380)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele C-Allele G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
 Asian
rs4755404 Japan (I) SZ
CTR
0.39
0.26
0.61
0.74
13 (0.130)
4 (0.040)
52 (0.520)
44 (0.440)
35 (0.350)
52 (0.520)
rs4755404 Japan (II) SZ
CTR
0.41
0.34
0.60
0.67
13 (0.130)
6 (0.060)
55 (0.550)
55 (0.550)
32 (0.320)
39 (0.390)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele C-Allele G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
 Asian
rs4534557 Japan (I) SZ
CTR
0.45
0.35
0.55
0.65
21 (0.210)
9 (0.090)
48 (0.480)
52 (0.520)
31 (0.310)
39 (0.390)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs4756224 Japan (I) SZ
CTR
0.28
0.27
0.73
0.73
4 (0.040)
6 (0.060)
47 (0.470)
42 (0.420)
49 (0.490)
52 (0.520)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs1923298 Japan (I) SZ
CTR
0.24
0.26
0.77
0.75
2 (0.020)
4 (0.040)
43 (0.430)
43 (0.430)
55 (0.550)
53 (0.530)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs1885343 Japan (I) SZ
CTR
0.49
0.47
0.52
0.53
24 (0.240)
24 (0.240)
49 (0.490)
46 (0.460)
27 (0.270)
30 (0.300)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
SNP7 Japan (I) SZ
CTR
0.52
0.46
0.49
0.54
26 (0.260)
18 (0.180)
51 (0.510)
56 (0.560)
23 (0.230)
26 (0.260)
SNP7 Japan (II) SZ
CTR
0.54
0.45
0.47
0.55
23 (0.230)
15 (0.150)
61 (0.610)
60 (0.600)
16 (0.160)
25 (0.250)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs752949 Japan (I) SZ
CTR
0.31
0.30
0.70
0.71
10 (0.100)
5 (0.050)
41 (0.410)
49 (0.490)
49 (0.490)
46 (0.460)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs1042113 Japan (I) SZ
CTR
0.32
0.29
0.68
0.71
11 (0.110)
5 (0.050)
42 (0.420)
48 (0.480)
47 (0.470)
47 (0.470)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   del-Allele A-Allele del/del
(frequency)
del/A
(frequency)
A/A
(frequency)
 Asian
rs3838796 Japan (I) SZ
CTR
0.34
0.32
0.66
0.68
12 (0.120)
9 (0.090)
44 (0.440)
46 (0.460)
44 (0.440)
45 (0.450)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs1570216 Japan (I) SZ
CTR
0.23
0.22
0.78
0.78
5 (0.050)
3 (0.030)
35 (0.350)
38 (0.380)
60 (0.600)
59 (0.590)
SZGene Recent Updates
SZGene Stats
Studies: 1727
Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
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