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Polymorphism Details

Study:

Ikeda, 2008

Gene:

YWHAE (MDS; MDCR; KCIP-1; 14-3-3E)

Protein:

tyrosine 3/tryptophan 5 -monooxygenase activation protein, epsilon polypeptide (14-3-3 epsilon; protein kinase C inhibitor protein-1; mitochondrial import stimulation factor L subunit)

Chromosome:

17 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 9 January 2010

Total number of polymorphisms investigated by this study: 11

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	C-Allele	A/A (frequency)	A/C (frequency)	C/C (frequency)
Asian
rs3752826	Japan (I)	SZ CTR	0.49 0.42	0.51 0.58	86 (0.236) 61 (0.178)	182 (0.500) 167 (0.487)	96 (0.264) 115 (0.335)

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs11655548	Japan (I)	SZ CTR	0.29 0.38	0.71 0.62	31 (0.085) 50 (0.146)	151 (0.415) 162 (0.474)	182 (0.500) 130 (0.380)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Asian
rs12452627	Japan (I)	SZ CTR	0.18 0.20	0.82 0.80	11 (0.030) 13 (0.038)	106 (0.291) 108 (0.316)	247 (0.679) 221 (0.646)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs1873827	Japan (I)	SZ CTR	0.42 0.50	0.58 0.50	65 (0.179) 84 (0.246)	178 (0.489) 171 (0.500)	121 (0.332) 87 (0.254)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		C-Allele	A-Allele	C/C (frequency)	C/A (frequency)	A/A (frequency)
Asian
rs2131431	Japan (I)	SZ CTR	0.13 0.19	0.87 0.81	6 (0.017) 12 (0.035)	83 (0.229) 103 (0.301)	274 (0.755) 227 (0.664)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Asian
rs34041110	Japan (I)	SZ CTR	0.49 0.43	0.51 0.57	87 (0.239) 62 (0.181)	182 (0.500) 167 (0.488)	95 (0.261) 113 (0.330)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Asian
rs7214541	Japan (I)	SZ CTR	0.45 0.49	0.55 0.51	72 (0.198) 83 (0.243)	180 (0.495) 171 (0.500)	112 (0.308) 88 (0.257)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		C-Allele	G-Allele	C/C (frequency)	C/G (frequency)	G/G (frequency)
Asian
rs7224258	Japan (I)	SZ CTR	0.15 0.20	0.85 0.80	8 (0.022) 14 (0.041)	93 (0.255) 111 (0.325)	263 (0.723) 217 (0.635)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Asian
rs8064578	Japan (I)	SZ CTR	0.48 0.43	0.52 0.57	86 (0.236) 64 (0.187)	182 (0.499) 168 (0.491)	97 (0.266) 110 (0.322)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes*
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs9393	Japan (I)	SZ CTR	0.27 0.28	0.73 0.72	27 (0.074) 27 (0.079)	144 (0.397) 138 (0.402)	192 (0.529) 178 (0.519)

*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	G-Allele	C/C (frequency)	C/G (frequency)	G/G (frequency)
Asian
rs28365859	Japan (I)	SZ CTR	0.18 0.25	0.82 0.75	13 (0.036) 23 (0.067)	106 (0.291) 127 (0.371)	245 (0.673) 192 (0.561)
rs28365859	Japan (II)	SZ CTR	0.20 0.24	0.80 0.76	38 (0.036) 85 (0.061)	351 (0.330) 493 (0.356)	676 (0.635) 808 (0.583)


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