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Printable version
Polymorphism Details
Study:
Liu, 2002b
Gene:
PRODH
(PIG6; SCZD4; HSPOX2; PRODH1; PRODH2; TP53I6)
Protein:
proline dehydrogenase (oxidase) 1
(proline oxidase 2; p53 induced protein; Proline oxidase, mitochondrial; tumor protein p53 inducible protein 6; proline dehydrogenase (proline oxidase ))
Chromosome:
22
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 22 October 2010
Total number of polymorphisms investigated by this study: 11
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs372055 (PRODH*1945)
South Africa
SZ
CTR
0.19
0.13
0.81
0.87
4 (0.038)
1 (0.013)
33 (0.311)
17 (0.227)
69 (0.651)
57 (0.760)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs383964 (PRODH*2026)
South Africa
SZ
CTR
0.04
0.03
0.96
0.97
0 (0.000)
0 (0.000)
9 (0.083)
5 (0.067)
100 (0.917)
70 (0.933)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs450048 (PRODH*1766)
South Africa
SZ
CTR
0.04
0.03
0.96
0.97
0 (0.000)
0 (0.000)
9 (0.083)
5 (0.067)
100 (0.917)
70 (0.933)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs2870983 (Ala472Thr)
South Africa
SZ
CTR
0.08
0.01
0.92
0.99
0 (0.000)
0 (0.000)
12 (0.160)
1 (0.020)
63 (0.840)
49 (0.980)
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
m-Allele
M-Allele
m/m
(frequency)
m/M
(frequency)
M/M
(frequency)
Other/Mixed
PRODH*SC15860662
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
PRODH*SC15860662
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Other/Mixed
rs372055 (PRODH*1945)
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs372055 (PRODH*1945)
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Other/Mixed
rs383964 (PRODH*2026)
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs383964 (PRODH*2026)
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Other/Mixed
rs16983466 (PRODH*1482)
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs16983466 (PRODH*1482)
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Other/Mixed
rs1808320 (PRODH*1195)
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs1808320 (PRODH*1195)
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Other/Mixed
rs450048 (PRODH*1766)
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs450048 (PRODH*1766)
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
m-Allele
M-Allele
m/m
(frequency)
m/M
(frequency)
M/M
(frequency)
Other/Mixed
PRODH*SC15863529
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
PRODH*SC15863529
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
A-Allele
C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
Other/Mixed
rs2008720 (PRODH*260)
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs2008720 (PRODH*260)
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Other/Mixed
rs2064828 (PRODH*757)
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs2064828 (PRODH*757)
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Other/Mixed
rs2904552 (PRODH*1496)
USA (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs2904552 (PRODH*1496)
USA (II)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
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SZGene Stats
Studies: 1727
Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
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