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Printable version
Polymorphism Details
Study:
Fatemi, 2008
Gene:
PDE4B
(DPDE4; PDEIVB)
View on MSGene
Protein:
phosphodiesterase 4B, cAMP-specific
(phosphodiesterase; dunce-like phosphodiesterase E4)
Chromosome:
1
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 22 October 2010
Total number of polymorphisms investigated by this study: 27
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
T-Allele
G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
African Descent
rs4454519
USA
SZ
CTR
0.11
0.08
0.89
0.92
3 (0.013)
1 (0.005)
45 (0.192)
31 (0.158)
186 (0.795)
164 (0.837)
Caucasian
rs4454519
USA
SZ
CTR
0.18
0.18
0.82
0.82
22 (0.034)
13 (0.032)
193 (0.300)
121 (0.297)
429 (0.666)
273 (0.671)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
m-Allele
M-Allele
m/m
(frequency)
m/M
(frequency)
M/M
(frequency)
African Descent
rs6588174
USA
SZ
CTR
0.76
0.73
0.24
0.27
136 (0.581)
107 (0.540)
85 (0.363)
77 (0.389)
13 (0.056)
14 (0.071)
Caucasian
rs6588174
USA
SZ
CTR
0.49
0.51
0.51
0.49
157 (0.243)
107 (0.263)
322 (0.499)
203 (0.499)
166 (0.257)
97 (0.238)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
m-Allele
M-Allele
m/m
(frequency)
m/M
(frequency)
M/M
(frequency)
African Descent
rs1392812
USA
SZ
CTR
0.37
0.38
0.63
0.62
32 (0.137)
28 (0.142)
109 (0.466)
92 (0.467)
93 (0.397)
77 (0.391)
Caucasian
rs1392812
USA
SZ
CTR
0.46
0.45
0.54
0.55
134 (0.208)
83 (0.203)
320 (0.496)
202 (0.495)
191 (0.296)
123 (0.301)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
m-Allele
M-Allele
m/m
(frequency)
m/M
(frequency)
M/M
(frequency)
African Descent
rs2503166
USA
SZ
CTR
0.31
0.31
0.69
0.69
23 (0.098)
19 (0.096)
100 (0.427)
84 (0.426)
111 (0.474)
94 (0.477)
Caucasian
rs2503166
USA
SZ
CTR
0.28
0.29
0.72
0.71
52 (0.081)
34 (0.084)
262 (0.407)
168 (0.413)
329 (0.512)
205 (0.504)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
A-Allele
C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
African Descent
rs583018
USA
SZ
CTR
0.70
0.71
0.30
0.29
114 (0.489)
98 (0.497)
98 (0.421)
82 (0.416)
21 (0.090)
17 (0.086)
Caucasian
rs583018
USA
SZ
CTR
0.34
0.32
0.66
0.68
75 (0.116)
41 (0.101)
290 (0.450)
177 (0.435)
279 (0.433)
189 (0.464)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
m-Allele
M-Allele
m/m
(frequency)
m/M
(frequency)
M/M
(frequency)
African Descent
rs1572680
USA
SZ
CTR
0.17
0.20
0.83
0.80
7 (0.030)
8 (0.041)
67 (0.286)
62 (0.315)
160 (0.684)
127 (0.645)
Caucasian
rs1572680
USA
SZ
CTR
0.50
0.54
0.50
0.46
160 (0.248)
120 (0.295)
322 (0.500)
202 (0.496)
162 (0.252)
85 (0.209)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
African Descent
rs599381
USA
SZ
CTR
0.07
0.03
0.93
0.97
1 (0.004)
0 (0.000)
32 (0.137)
11 (0.056)
200 (0.858)
186 (0.944)
Caucasian
rs599381
USA
SZ
CTR
0.22
0.20
0.78
0.80
32 (0.050)
17 (0.042)
223 (0.346)
132 (0.324)
389 (0.604)
259 (0.635)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
T-Allele
A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
African Descent
rs1040716
USA
SZ
CTR
0.84
0.88
0.16
0.12
166 (0.709)
155 (0.783)
62 (0.265)
40 (0.202)
6 (0.026)
3 (0.015)
Caucasian
rs1040716
USA
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
A-Allele
C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
African Descent
rs2144719
USA
SZ
CTR
0.09
0.10
0.91
0.90
2 (0.009)
2 (0.010)
37 (0.158)
36 (0.183)
195 (0.833)
159 (0.807)
Caucasian
rs2144719
USA
SZ
CTR
0.36
0.44
0.64
0.56
83 (0.129)
78 (0.192)
296 (0.460)
200 (0.491)
265 (0.411)
129 (0.317)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
G-Allele
T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
African Descent
rs4004
USA
SZ
CTR
0.09
0.09
0.91
0.91
2 (0.009)
2 (0.010)
40 (0.171)
32 (0.162)
192 (0.821)
163 (0.827)
Caucasian
rs4004
USA
SZ
CTR
0.35
0.37
0.65
0.63
80 (0.124)
55 (0.135)
294 (0.457)
190 (0.467)
270 (0.419)
162 (0.398)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
African Descent
rs4320761
USA
SZ
CTR
0.44
0.42
0.56
0.58
45 (0.192)
35 (0.178)
115 (0.491)
96 (0.487)
74 (0.316)
66 (0.335)
Caucasian
rs4320761
USA
SZ
CTR
0.07
0.04
0.93
0.96
3 (0.005)
1 (0.002)
82 (0.127)
32 (0.079)
559 (0.868)
374 (0.919)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
African Descent
rs910694
USA
SZ
CTR
0.72
0.77
0.28
0.23
121 (0.519)
118 (0.599)
94 (0.403)
69 (0.350)
18 (0.077)
10 (0.051)
Caucasian
rs910694
USA
SZ
CTR
0.44
0.50
0.56
0.50
126 (0.196)
102 (0.250)
318 (0.494)
204 (0.500)
200 (0.311)
102 (0.250)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
A-Allele
C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
African Descent
rs1321177
USA
SZ
CTR
0.31
0.32
0.69
0.68
22 (0.094)
20 (0.102)
100 (0.427)
86 (0.437)
112 (0.479)
91 (0.462)
Caucasian
rs1321177
USA
SZ
CTR
0.30
0.37
0.70
0.63
56 (0.087)
56 (0.138)
268 (0.417)
190 (0.467)
319 (0.496)
161 (0.396)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
C-Allele
A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
African Descent
rs4077431
USA
SZ
CTR
0.48
0.42
0.52
0.58
55 (0.234)
35 (0.178)
117 (0.498)
96 (0.487)
63 (0.268)
66 (0.335)
Caucasian
rs4077431
USA
SZ
CTR
0.41
0.42
0.59
0.58
108 (0.168)
72 (0.177)
311 (0.483)
198 (0.486)
225 (0.349)
137 (0.337)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
African Descent
rs7547294
USA
SZ
CTR
0.41
0.48
0.59
0.52
40 (0.171)
46 (0.235)
114 (0.487)
98 (0.500)
80 (0.342)
52 (0.265)
Caucasian
rs7547294
USA
SZ
CTR
0.49
0.50
0.51
0.50
155 (0.240)
100 (0.246)
322 (0.499)
203 (0.500)
168 (0.260)
103 (0.254)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
African Descent
rs783038
USA
SZ
CTR
0.07
0.08
0.93
0.92
1 (0.004)
1 (0.005)
32 (0.137)
30 (0.152)
201 (0.859)
166 (0.843)
Caucasian
rs783038
USA
SZ
CTR
0.25
0.30
0.75
0.70
40 (0.062)
36 (0.088)
241 (0.374)
170 (0.417)
363 (0.564)
202 (0.495)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
African Descent
rs7519259
USA
SZ
CTR
0.19
0.16
0.81
0.84
9 (0.038)
5 (0.025)
72 (0.308)
54 (0.274)
153 (0.654)
138 (0.701)
Caucasian
rs7519259
USA
SZ
CTR
0.48
0.47
0.52
0.53
148 (0.230)
91 (0.224)
321 (0.498)
203 (0.499)
175 (0.272)
113 (0.278)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
T-Allele
A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
African Descent
rs556303
USA
SZ
CTR
0.06
0.07
0.94
0.93
1 (0.004)
1 (0.005)
28 (0.120)
25 (0.127)
205 (0.876)
171 (0.868)
Caucasian
rs556303
USA
SZ
CTR
0.37
0.36
0.63
0.64
87 (0.135)
54 (0.133)
300 (0.466)
189 (0.464)
257 (0.399)
164 (0.403)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
African Descent
rs531244
USA
SZ
CTR
0.19
0.19
0.81
0.81
9 (0.038)
7 (0.036)
73 (0.311)
61 (0.311)
153 (0.651)
128 (0.653)
Caucasian
rs531244
USA
SZ
CTR
0.31
0.34
0.69
0.66
63 (0.098)
46 (0.113)
277 (0.430)
181 (0.445)
304 (0.472)
180 (0.442)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
African Descent
rs4259616
USA
SZ
CTR
0.45
0.48
0.55
0.52
47 (0.200)
45 (0.228)
116 (0.494)
98 (0.497)
72 (0.306)
54 (0.274)
Caucasian
rs4259616
USA
SZ
CTR
0.20
0.17
0.80
0.83
27 (0.042)
12 (0.029)
208 (0.323)
118 (0.290)
409 (0.635)
277 (0.681)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
African Descent
rs2503220
USA
SZ
CTR
0.14
0.16
0.86
0.84
5 (0.021)
5 (0.025)
57 (0.244)
52 (0.263)
172 (0.735)
141 (0.712)
Caucasian
rs2503220
USA
SZ
CTR
0.09
0.06
0.91
0.94
5 (0.008)
2 (0.005)
103 (0.160)
49 (0.120)
536 (0.832)
357 (0.875)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
African Descent
rs2503161
USA
SZ
CTR
0.61
0.64
0.39
0.36
89 (0.379)
72 (0.385)
111 (0.472)
94 (0.503)
35 (0.149)
21 (0.112)
Caucasian
rs2503161
USA
SZ
CTR
0.50
0.51
0.50
0.49
159 (0.247)
108 (0.265)
322 (0.500)
203 (0.499)
163 (0.253)
96 (0.236)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
African Descent
rs2489907
USA
SZ
CTR
0.29
0.35
0.71
0.65
20 (0.085)
24 (0.122)
97 (0.415)
89 (0.452)
117 (0.500)
84 (0.426)
Caucasian
rs2489907
USA
SZ
CTR
0.27
0.25
0.73
0.75
46 (0.071)
26 (0.064)
251 (0.390)
155 (0.381)
347 (0.539)
226 (0.555)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
African Descent
rs1463884
USA
SZ
CTR
0.45
0.41
0.55
0.59
48 (0.205)
33 (0.168)
116 (0.496)
95 (0.482)
70 (0.299)
69 (0.350)
Caucasian
rs1463884
USA
SZ
CTR
0.15
0.13
0.85
0.87
15 (0.023)
7 (0.017)
169 (0.262)
95 (0.233)
460 (0.714)
305 (0.749)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
A-Allele
C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
African Descent
rs1354064
USA
SZ
CTR
0.15
0.14
0.85
0.86
5 (0.021)
4 (0.020)
60 (0.256)
48 (0.244)
169 (0.722)
145 (0.736)
Caucasian
rs1354064
USA
SZ
CTR
0.09
0.06
0.91
0.94
5 (0.008)
1 (0.002)
101 (0.157)
46 (0.113)
538 (0.835)
360 (0.885)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
African Descent
rs1338721
USA
SZ
CTR
0.72
0.75
0.28
0.25
123 (0.526)
111 (0.563)
93 (0.397)
74 (0.376)
18 (0.077)
12 (0.061)
Caucasian
rs1338721
USA
SZ
CTR
0.48
0.46
0.52
0.54
150 (0.233)
85 (0.209)
322 (0.500)
202 (0.496)
172 (0.267)
120 (0.295)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
African Descent
rs11208816
USA
SZ
CTR
0.68
0.69
0.32
0.31
108 (0.462)
93 (0.472)
102 (0.436)
85 (0.431)
24 (0.103)
19 (0.096)
Caucasian
rs11208816
USA
SZ
CTR
0.48
0.45
0.52
0.55
147 (0.228)
83 (0.204)
321 (0.498)
202 (0.496)
176 (0.273)
122 (0.300)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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