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Polymorphism Details
Study:
Shibata, 2006
Gene:
GRIK4
(KA1; EAA1; GRIK)
Protein:
glutamate receptor KA1
(excitatory amino acid receptor 1)
Chromosome:
11
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 17 January 2010
Total number of polymorphisms investigated by this study: 24
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Asian
rs2156635
Japan (I)
SZ
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Asian
rs3133226
Japan (I)
SZ
CTR
0.45
0.46
0.56
0.55
20 (0.200)
23 (0.230)
49 (0.490)
45 (0.450)
31 (0.310)
32 (0.320)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Asian
rs3133855
Japan (I)
SZ
CTR
0.41
0.42
0.59
0.59
21 (0.210)
22 (0.220)
40 (0.400)
39 (0.390)
39 (0.390)
39 (0.390)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
A-Allele
C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
Asian
GRIK4_SNP9
Japan (I)
SZ
CTR
0.23
0.24
0.77
0.77
7 (0.070)
8 (0.080)
32 (0.320)
31 (0.310)
61 (0.610)
61 (0.610)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs1317176
Japan (I)
SZ
CTR
0.21
0.19
0.80
0.81
5 (0.050)
4 (0.040)
31 (0.310)
30 (0.300)
64 (0.640)
66 (0.660)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Asian
rs1317514
Japan (I)
SZ
CTR
0.41
0.38
0.60
0.62
15 (0.150)
13 (0.130)
51 (0.510)
50 (0.500)
34 (0.340)
37 (0.370)
rs1317514
Japan (II)
SZ
CTR
0.35
0.36
0.65
0.64
12 (0.112)
14 (0.140)
50 (0.467)
44 (0.440)
45 (0.421)
42 (0.420)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs1343789
Japan (I)
SZ
CTR
0.40
0.38
0.60
0.62
16 (0.160)
12 (0.120)
48 (0.480)
52 (0.520)
36 (0.360)
36 (0.360)
rs1343789
Japan (II)
SZ
CTR
0.32
0.36
0.68
0.64
9 (0.084)
15 (0.150)
50 (0.467)
42 (0.420)
48 (0.449)
43 (0.430)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs1893906
Japan (I)
SZ
CTR
0.26
0.27
0.74
0.74
5 (0.050)
6 (0.060)
42 (0.420)
41 (0.410)
53 (0.530)
53 (0.530)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs2000868
Japan (I)
SZ
CTR
0.37
0.40
0.64
0.60
15 (0.150)
16 (0.160)
43 (0.430)
48 (0.480)
42 (0.420)
36 (0.360)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
G-Allele
C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
Asian
rs2000870
Japan (I)
SZ
CTR
0.38
0.44
0.63
0.56
16 (0.160)
19 (0.190)
43 (0.430)
50 (0.500)
41 (0.410)
31 (0.310)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs2004978
Japan (I)
SZ
CTR
0.49
0.48
0.51
0.52
25 (0.250)
25 (0.250)
48 (0.480)
46 (0.460)
27 (0.270)
29 (0.290)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Asian
rs2156634
Japan (I)
SZ
CTR
0.10
0.09
0.90
0.92
2 (0.020)
1 (0.010)
16 (0.160)
15 (0.150)
82 (0.820)
84 (0.840)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs2156637
Japan (I)
SZ
CTR
0.48
0.48
0.52
0.53
23 (0.230)
25 (0.250)
50 (0.500)
45 (0.450)
27 (0.270)
30 (0.300)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs2248404
Japan (I)
SZ
CTR
0.26
0.28
0.74
0.72
6 (0.060)
7 (0.070)
40 (0.400)
42 (0.420)
54 (0.540)
51 (0.510)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Asian
rs2298725
Japan (I)
SZ
CTR
0.26
0.33
0.75
0.67
8 (0.080)
10 (0.100)
35 (0.350)
46 (0.460)
57 (0.570)
44 (0.440)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs2846092
Japan (I)
SZ
CTR
0.41
0.35
0.60
0.66
16 (0.160)
9 (0.090)
49 (0.490)
51 (0.510)
35 (0.350)
40 (0.400)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs2846103
Japan (I)
SZ
CTR
0.22
0.19
0.79
0.82
4 (0.040)
5 (0.050)
35 (0.350)
27 (0.270)
61 (0.610)
68 (0.680)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
G-Allele
C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
Asian
rs2852230
Japan (I)
SZ
CTR
0.53
0.45
0.47
0.55
27 (0.270)
23 (0.230)
52 (0.520)
44 (0.440)
21 (0.210)
33 (0.330)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Asian
rs3133845
Japan (I)
SZ
CTR
0.47
0.51
0.53
0.49
21 (0.210)
27 (0.270)
52 (0.520)
48 (0.480)
27 (0.270)
25 (0.250)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs3802911
Japan (I)
SZ
CTR
0.55
0.47
0.45
0.54
26 (0.260)
17 (0.170)
58 (0.580)
59 (0.590)
16 (0.160)
24 (0.240)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Asian
rs3824978
Japan (I)
SZ
CTR
0.31
0.33
0.69
0.68
12 (0.120)
8 (0.080)
38 (0.380)
49 (0.490)
50 (0.500)
43 (0.430)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Asian
rs4359220
Japan (I)
SZ
CTR
0.19
0.14
0.82
0.86
2 (0.020)
0 (0.000)
33 (0.330)
28 (0.280)
65 (0.650)
72 (0.720)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
A-Allele
T/T
(frequency)
T/A
(frequency)
A/A
(frequency)
Asian
rs4936552
Japan (I)
SZ
CTR
0.45
0.49
0.56
0.51
20 (0.200)
24 (0.240)
49 (0.490)
50 (0.500)
31 (0.310)
26 (0.260)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Asian
rs611065
Japan (I)
SZ
CTR
0.37
0.34
0.63
0.66
19 (0.190)
13 (0.130)
36 (0.360)
42 (0.420)
45 (0.450)
45 (0.450)
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Genes: 1008
Polymorphisms: 8788
Meta-analyses: 287
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